Detailed information NTG0644953

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N4T39_RS05540
• Genome accession: NZ_CP107720
• Coordinates: 1148057..1149049 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2021CK-01361
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1143057..1154049

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N4T39_RS05510 (N4T39_05510)	ispD	1143118..1143828 (+)	711	WP_000246137.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
N4T39_RS05515 (N4T39_05515)	ispF	1143828..1144307 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N4T39_RS05520 (N4T39_05520)	truD	1144304..1145353 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
N4T39_RS05525 (N4T39_05525)	surE	1145334..1146095 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
N4T39_RS05530 (N4T39_05530)	pcm	1146089..1146715 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
N4T39_RS05535 (N4T39_05535)	nlpD	1146900..1147994 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
N4T39_RS05540 (N4T39_05540)	rpoS	1148057..1149049 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
N4T39_RS05545 (N4T39_05545)	ygbN	1149143..1150507 (-)	1365	WP_000104466.1	GntP family transporter	-
N4T39_RS05550 (N4T39_05550)	ygbM	1150596..1151372 (-)	777	WP_001136936.1	HPr family phosphocarrier protein	-
N4T39_RS05555 (N4T39_05555)	ygbL	1151377..1152015 (-)	639	WP_001278994.1	aldolase	-
N4T39_RS05560 (N4T39_05560)	otnK	1152012..1153274 (-)	1263	WP_000590398.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=644953 N4T39_RS05540 WP_000081550.1 1148057..1149049(+) (rpoS) [Escherichia coli strain 2021CK-01361]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=644953 N4T39_RS05540 WP_000081550.1 1148057..1149049(+) (rpoS) [Escherichia coli strain 2021CK-01361]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715