Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   L0Y95_RS11755 Genome accession   NZ_CP090786
Coordinates   2542222..2543727 (+) Length   501 a.a.
NCBI ID   WP_249471005.1    Uniprot ID   -
Organism   Burkholderia vietnamiensis strain 2003Ycf867     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2537222..2548727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y95_RS11730 (L0Y95_11730) kdsD 2538463..2539446 (+) 984 WP_014723665.1 arabinose 5-phosphate isomerase KdsD -
  L0Y95_RS11735 (L0Y95_11735) - 2539446..2539982 (+) 537 WP_011886052.1 HAD family hydrolase -
  L0Y95_RS11740 (L0Y95_11740) lptC 2539986..2540600 (+) 615 WP_011886053.1 LPS export ABC transporter periplasmic protein LptC -
  L0Y95_RS11745 (L0Y95_11745) lptA 2540621..2541286 (+) 666 WP_249471002.1 lipopolysaccharide transport periplasmic protein LptA -
  L0Y95_RS11750 (L0Y95_11750) lptB 2541283..2542059 (+) 777 WP_011886055.1 LPS export ABC transporter ATP-binding protein -
  L0Y95_RS11755 (L0Y95_11755) rpoN/rpoN1 2542222..2543727 (+) 1506 WP_249471005.1 RNA polymerase factor sigma-54 Machinery gene
  L0Y95_RS11760 (L0Y95_11760) raiA 2543886..2544245 (+) 360 WP_011886057.1 ribosome-associated translation inhibitor RaiA -
  L0Y95_RS11765 (L0Y95_11765) - 2544440..2544952 (+) 513 WP_011886058.1 PTS sugar transporter subunit IIA -
  L0Y95_RS11770 (L0Y95_11770) hprK 2545082..2546050 (+) 969 WP_006483133.1 HPr(Ser) kinase/phosphatase -
  L0Y95_RS11775 (L0Y95_11775) rapZ 2546126..2547034 (+) 909 WP_249471008.1 RNase adapter RapZ -
  L0Y95_RS11780 (L0Y95_11780) - 2547062..2547700 (+) 639 WP_011886060.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54827.01 Da        Isoelectric Point: 4.8247

>NTDB_id=644797 L0Y95_RS11755 WP_249471005.1 2542222..2543727(+) (rpoN/rpoN1) [Burkholderia vietnamiensis strain 2003Ycf867]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLESDDEWIASPLRVAADGSLIAQTPPAPNGESGS
MNGSGQSSERAERDEPAATDEYDGYGSGDASDGPQWNLDEFGRSSGASDDDDLPPLQVQEAATSLREHLSAQLRVTQASP
RDRALVMFLIESLDDDGYLTASLDEVLVDLPPELEVDCDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKQLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKAGQGWLAELNPEVMP
RLRINNLYANILRNSRGDPSTGSLKQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALRIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=644797 L0Y95_RS11755 WP_249471005.1 2542222..2543727(+) (rpoN/rpoN1) [Burkholderia vietnamiensis strain 2003Ycf867]
ATGAAAGCCAGCCTCCAACTCCGCCTGTCGCAACACCTTGCGTTGACGCCGCAGCTGCAGCAGTCGATTCGGCTTTTGCA
GCTGTCGACGCTCGAGCTGCAGCAGGAAGTCGCGATGGCCGTCGCGCAGAATCCGCTGCTGGAAAGCGACGACGAATGGA
TCGCGAGCCCGCTGCGCGTCGCAGCCGACGGATCGCTGATCGCGCAGACGCCGCCCGCCCCCAACGGCGAGTCCGGCAGC
ATGAACGGCAGCGGCCAGTCGAGCGAGCGCGCCGAACGCGACGAGCCGGCCGCCACCGACGAATACGACGGCTATGGCTC
GGGCGACGCGAGCGACGGCCCGCAATGGAATCTCGACGAATTCGGCCGCTCGAGCGGCGCGTCGGACGACGACGATCTCC
CGCCGCTGCAGGTCCAGGAAGCCGCCACGTCGCTGCGCGAGCATCTGTCCGCGCAGCTGCGCGTCACGCAGGCCAGCCCG
CGCGATCGCGCGCTCGTGATGTTCCTGATCGAATCGCTCGACGACGACGGCTACCTGACCGCGTCGCTCGACGAAGTGCT
GGTCGACCTGCCGCCCGAACTGGAAGTCGACTGCGACGAGCTGAATGCGGCGCTCGCGCTGCTGCACAGCTTCGATCCGG
CCGGCGTCGGCGCGCGCTCGGCGTCCGAATGCCTGAAGCTGCAACTGCTGCGGCTCGATCCGTCCCCGACCCGCACGCTC
GCGCTGGAAATCGTCTCGCAGCATCTCGAGCTGCTCGCCGCGCGCGACTTCACGCGGCTGCGCAAGCAACTGAAGGCGAG
CGACGACGCGCTGCGCGACGCGCACGCGCTGATCCGCTCGCTGGAGCCGTTCCCGGGCGCGGCCTACGGCAAGGCCGAGG
CCGACTACGTGGTACCCGACATCATCGTGAAGAAGGCCGGCCAGGGCTGGCTCGCGGAGCTCAATCCGGAGGTGATGCCG
CGCCTGCGGATCAACAACCTGTACGCGAACATTCTGCGCAACAGCCGGGGCGATCCGTCGACCGGATCGTTGAAGCAACA
GCTGCAGGAAGCACGCTGGCTGATCAAGAATATCCAGCAGCGATTCGACACGATCCTGCGTGTCGCACAGGCTATTGTCG
AACGTCAGAAGAACTTCTTTGCGCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCAGCCGTGTGACAACCGGTAAGTACATGCTGACCCCGTTCGGGACGCTGGAGTTCAAGTACTT
CTTCGGATCGCACGTTTCGACCGACACCGGAGGCGCCGCATCGTCGACCGCCATCCGAGCCCTGATCAAGCAACTGATAG
GAGCTGAAGACCCAAAGTCGCCACTTTCGGACAGCCGCATTGCCGAGCTGCTGGCAGAACAGGGATTCGTGGTCGCGCGC
CGCACGGTCGCGAAGTATCGCGAAGCCCTCAGGATCCCGGCAGTGAATCTGCGCAAATCTCTTTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

67.641

100

0.693