Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0Y95_RS08090 Genome accession   NZ_CP090786
Coordinates   1752328..1753704 (-) Length   458 a.a.
NCBI ID   WP_011885162.1    Uniprot ID   I2DNF8
Organism   Burkholderia vietnamiensis strain 2003Ycf867     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1747328..1758704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y95_RS08070 (L0Y95_08070) cls 1747629..1749080 (+) 1452 WP_249470813.1 cardiolipin synthase -
  L0Y95_RS08075 (L0Y95_08075) - 1749180..1749659 (-) 480 WP_014723231.1 glutathione peroxidase -
  L0Y95_RS08080 (L0Y95_08080) - 1749796..1751724 (+) 1929 WP_014723232.1 ATP-binding cassette domain-containing protein -
  L0Y95_RS08085 (L0Y95_08085) - 1751923..1752189 (-) 267 WP_014723233.1 DUF2866 domain-containing protein -
  L0Y95_RS08090 (L0Y95_08090) radA 1752328..1753704 (-) 1377 WP_011885162.1 DNA repair protein RadA Machinery gene
  L0Y95_RS08095 (L0Y95_08095) alr 1753714..1754784 (-) 1071 WP_011885163.1 alanine racemase -
  L0Y95_RS08100 (L0Y95_08100) lplT 1755003..1756310 (+) 1308 WP_249470817.1 lysophospholipid transporter LplT -
  L0Y95_RS08105 (L0Y95_08105) thiD 1756378..1757187 (+) 810 WP_011885165.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L0Y95_RS08110 (L0Y95_08110) - 1757206..1758165 (-) 960 WP_059474491.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48844.32 Da        Isoelectric Point: 6.9993

>NTDB_id=644793 L0Y95_RS08090 WP_011885162.1 1752328..1753704(-) (radA) [Burkholderia vietnamiensis strain 2003Ycf867]
MAKQKTVYVCSECGGQTPKWQGQCPSCHAWNTLVESVAESPAAHRFQSLAKRAPVQRLADIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGAPVAELKLLAEIQLEKIQ
AAIDTERPDVAVVDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTAALIPKANAPKQPIEGLNVMAVERIEQAIDRVRELE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=644793 L0Y95_RS08090 WP_011885162.1 1752328..1753704(-) (radA) [Burkholderia vietnamiensis strain 2003Ycf867]
GTGGCGAAACAGAAAACCGTCTACGTCTGCAGCGAGTGCGGCGGACAAACCCCGAAATGGCAGGGCCAGTGCCCGTCGTG
CCATGCCTGGAACACGCTCGTCGAGTCGGTCGCGGAATCGCCGGCCGCCCATCGGTTCCAGTCGCTCGCGAAACGCGCGC
CGGTGCAGCGCCTGGCCGACATCGAGGCAGCCGACGTGCCGCGTTTCTCGACTGGCATCGGCGAATTCGACCGCGTGCTG
GGCGGCGGCCTGGTGCCCGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGTTGCTGCAGTC
GCTCGCCGACATCGCGAGCGAGCGGCGCGCGCTGTATATCAGCGGCGAGGAGTCGGCCGCGCAGATCGCGTTGCGCGCGC
AGCGGCTCGCGCTGCTCGACGGCGGCGCGCCGGTGGCCGAGTTGAAGCTGCTCGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACACCGAACGGCCCGACGTGGCCGTCGTCGACTCGATCCAGACGGTGTACTCGGAGGCGCTGACCTCGGC
GCCCGGGTCGGTCGCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACGCGCATCGCGAAGCAGTCGGGCACCGCGATCATCA
TGGTCGGCCACGTGACGAAGGAGGGCAATCTCGCGGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGACACCCATTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAATCCGTCGGCGCTGTTCCTGTCGCAGCATGAGCAGGTCGTGCCCG
GCTCCTGCGTGCTGGTCACGCAGGAGGGGACGCGCCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGATACGGCGCACGTG
CCGAATCCGCGCCGGCTCGCGGTCGGCCTCGAGCAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGGCACGCGGG
CATCGCGTGCTTCGACCAGGACGTGTTCCTGAATGCGGTGGGCGGCGTGAAGATCACCGAGCCGGCCGCCGACCTCGCGG
TGCTGCTGGCGATCCATTCGTCGATGCGCAACAAGGCGTTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTGGGGCTCGCG
GGCGAGATCCGGCCGTCGCCGCGCGGCCAGGAGCGGCTGCGCGAGGCCGCGAAGCTCGGTTTCACGGCCGCGCTGATTCC
GAAGGCGAATGCGCCGAAGCAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGAGCGCATCGAGCAGGCGATTGACCGCG
TGCGCGAGCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2DNF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.675

100

0.5
  radA Streptococcus mitis SK321

47.162

100

0.472
  radA Streptococcus pneumoniae Rx1

46.855

100

0.472
  radA Streptococcus pneumoniae D39

46.855

100

0.472
  radA Streptococcus pneumoniae R6

46.855

100

0.472
  radA Streptococcus pneumoniae TIGR4

46.855

100

0.472
  radA Streptococcus mitis NCTC 12261

46.827

99.782

0.467