Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C1M_RS0101605 Genome accession   NZ_ACFJ01000001
Coordinates   331415..332779 (+) Length   454 a.a.
NCBI ID   WP_009872537.1    Uniprot ID   -
Organism   Chlamydia trachomatis D(s)2923     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 326415..337779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1M_RS0101580 accD 326477..327403 (-) 927 WP_009873092.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  C1M_RS0101585 - 327475..328095 (-) 621 WP_009873093.1 superoxide dismutase -
  C1M_RS0101590 - 328227..330008 (-) 1782 WP_009873094.1 phospho-sugar mutase -
  C1M_RS0101595 - 330160..330627 (-) 468 WP_009872535.1 DUF5070 domain-containing protein -
  C1M_RS0101600 rnc 330736..331431 (+) 696 WP_009873095.1 ribonuclease III -
  C1M_RS0101605 radA 331415..332779 (+) 1365 WP_009872537.1 DNA repair protein RadA Machinery gene
  C1M_RS0101610 - 332757..333482 (+) 726 WP_009871647.1 hydroxymethylbilane synthase -
  C1M_RS0101615 - 333877..334224 (+) 348 WP_014736615.1 hypothetical protein -
  C1M_RS0101620 pknD 334277..337081 (-) 2805 WP_009873096.1 serine/threonine-protein kinase PknD -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49785.26 Da        Isoelectric Point: 7.5070

>NTDB_id=64477 C1M_RS0101605 WP_009872537.1 331415..332779(+) (radA) [Chlamydia trachomatis D(s)2923]
MTTKIKTQWTCTECGTHSLKWLGQCSGCLQWNTLVEERTAPKLNTSSYSSSSSIPIPLNNVEFQEEIRIHTQAQGWNRLL
GGGTVRGSLALLGGEPGIGKSTLLLQISSQFAAAGHKVLYVCGEESVSQTSLRAQRLQISSNNIFLFPETNLEDIKQQID
NIAPDILVIDSIQIIFSPSLSSAPGSVAQVRETTAELMHIAKQKQITTFIIGHVTKSGEIAGPRILEHLVDTVLYFEGNA
HANYRMIRSVKNRFGPTNELLILSMHTDGLREVENPSGLFLQEKIVETTGSTIIPIVEGSETLLVEVQALVSSSPFSNPV
RKTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSIAGGLKITQPSADLGAVLSVVSSLYNRYLPKNYTYTGEIGLGGEIR
HVSHMEHRIKESIIMGFKGIVMPFGQIKGLPKEFLDQIDIIGVKTIKDAVRLLQ

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=64477 C1M_RS0101605 WP_009872537.1 331415..332779(+) (radA) [Chlamydia trachomatis D(s)2923]
ATGACAACAAAAATTAAAACACAGTGGACGTGTACAGAATGTGGCACACATTCTCTAAAATGGTTGGGACAATGTTCTGG
ATGTCTCCAGTGGAATACACTAGTCGAAGAAAGAACAGCTCCTAAACTAAACACATCTTCTTACTCCTCTAGCTCTTCTA
TTCCCATACCACTAAACAATGTGGAATTTCAGGAAGAAATACGAATTCATACCCAAGCTCAAGGCTGGAATCGCCTTCTA
GGAGGAGGAACGGTCCGAGGTAGCCTCGCTCTATTGGGAGGAGAGCCTGGCATAGGAAAGTCTACTTTACTACTTCAAAT
TTCCTCACAATTCGCGGCAGCTGGTCATAAAGTGTTGTACGTTTGCGGAGAAGAATCCGTGTCCCAAACTTCATTACGAG
CCCAACGCCTGCAAATCTCTAGCAACAATATTTTCCTATTCCCAGAAACAAATCTTGAAGACATCAAACAACAGATTGAT
AACATTGCTCCAGACATATTAGTTATCGACTCTATCCAGATCATTTTTTCTCCATCCTTAAGCTCTGCTCCAGGATCGGT
TGCTCAAGTGAGAGAAACGACCGCAGAGCTCATGCATATAGCAAAACAAAAACAGATCACAACCTTTATTATTGGACATG
TCACTAAATCTGGAGAAATCGCTGGCCCACGTATCCTAGAACACTTAGTAGACACTGTTCTCTATTTTGAAGGCAATGCG
CATGCTAATTACCGTATGATTCGCTCTGTTAAGAATCGTTTCGGCCCAACCAATGAATTATTAATTTTATCCATGCATAC
AGATGGATTACGCGAAGTAGAAAATCCGTCAGGTCTCTTTCTACAAGAAAAAATTGTAGAAACTACAGGCTCTACCATCA
TCCCTATTGTAGAAGGCTCTGAAACTCTTCTTGTAGAAGTTCAGGCTCTCGTTTCTTCATCCCCATTTTCTAATCCTGTA
CGAAAAACATCCGGATTTGATCCAAACCGATTTTCTTTACTCTTAGCTGTTTTAGAAAAAAGAGCGAATGTTAAATTATA
TACATCCGATGTCTTCCTTTCTATCGCTGGAGGCTTGAAAATCACACAACCTTCGGCAGACTTAGGAGCGGTGTTATCGG
TGGTGTCTTCCCTATATAACCGCTATTTACCTAAAAATTATACCTATACTGGAGAGATCGGCCTAGGAGGAGAAATTCGT
CACGTTTCACACATGGAACACCGCATAAAAGAAAGCATTATTATGGGGTTTAAAGGTATCGTGATGCCTTTTGGGCAGAT
AAAAGGCTTACCTAAAGAATTTTTGGATCAAATTGATATTATTGGGGTAAAAACAATTAAAGATGCTGTCCGCTTACTAC
AATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(76-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

100

0.491
  radA Streptococcus pneumoniae Rx1

46.903

99.559

0.467
  radA Streptococcus pneumoniae D39

46.903

99.559

0.467
  radA Streptococcus pneumoniae R6

46.903

99.559

0.467
  radA Streptococcus pneumoniae TIGR4

46.903

99.559

0.467
  radA Streptococcus mitis NCTC 12261

46.681

99.559

0.465
  radA Streptococcus mitis SK321

46.222

99.119

0.458

Multiple sequence alignment