Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0Z18_RS18745 Genome accession   NZ_CP090770
Coordinates   1297677..1299053 (+) Length   458 a.a.
NCBI ID   WP_217123527.1    Uniprot ID   -
Organism   Burkholderia multivorans strain 2007Ycf875II     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1292677..1304053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Z18_RS18725 (L0Z18_18725) - 1293200..1294183 (+) 984 WP_175686423.1 DUF1853 family protein -
  L0Z18_RS18730 (L0Z18_18730) thiD 1294202..1295011 (-) 810 WP_006407725.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L0Z18_RS18735 (L0Z18_18735) lplT 1295070..1296377 (-) 1308 WP_006407724.1 lysophospholipid transporter LplT -
  L0Z18_RS18740 (L0Z18_18740) alr 1296596..1297666 (+) 1071 WP_035951144.1 alanine racemase -
  L0Z18_RS18745 (L0Z18_18745) radA 1297677..1299053 (+) 1377 WP_217123527.1 DNA repair protein RadA Machinery gene
  L0Z18_RS18750 (L0Z18_18750) - 1299189..1299455 (+) 267 WP_006407722.1 DUF2866 domain-containing protein -
  L0Z18_RS18755 (L0Z18_18755) - 1299494..1301425 (-) 1932 WP_006407721.1 ATP-binding cassette domain-containing protein -
  L0Z18_RS18760 (L0Z18_18760) - 1301561..1302040 (+) 480 WP_006402630.1 glutathione peroxidase -
  L0Z18_RS18765 (L0Z18_18765) cls 1302078..1303517 (-) 1440 WP_198122244.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48739.22 Da        Isoelectric Point: 7.1656

>NTDB_id=644717 L0Z18_RS18745 WP_217123527.1 1297677..1299053(+) (radA) [Burkholderia multivorans strain 2007Ycf875II]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPTAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGAAPAAELKLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKIAEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTTALIPKANAPKQAIEGLNVMAVERLEQAIDRVRGLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=644717 L0Z18_RS18745 WP_217123527.1 1297677..1299053(+) (radA) [Burkholderia multivorans strain 2007Ycf875II]
GTGGCAAAACAGAAAACCGTCTATGTCTGCAGCGAGTGCGGCGGACAAACCCCGAAGTGGCAGGGGCAGTGCCCGTCGTG
CCAGGCCTGGAATACGCTCGTCGAATCGGTCGCCGAATCGCCGACCGCCCATCGCTTCCAGTCGCTCGCGAAACGTGCGC
CCGTCCAGCGCCTCGTCGACATCGAAGCGGCCGACGTGCCGCGCTTCTCGACCGGGATCGGCGAATTCGATCGCGTGCTC
GGCGGCGGCCTCGTCGCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTCGCGCTGCTCGACGGTGCCGCGCCGGCCGCCGAGCTGAAGCTGCTGGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACGCGGAGCGGCCCGACGTCGCGGTGATCGACTCGATCCAGACCGTCTACTCGGAGGCGCTGACCTCCGC
ACCGGGCTCGGTCGCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACCCGCATCGCGAAACAGTCGGGTACCGCGATCATCA
TGGTCGGCCACGTGACGAAGGAGGGCAACCTCGCGGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGATACGCACTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAACCCGTCGGCGCTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAGGGCACGCGCCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGATACCGCGCACGTG
CCGAATCCGCGCCGGCTCGCGGTCGGCCTCGAACAGAACCGGCTCGCGATGCTGCTCGCCGTGCTGCACCGGCATGCGGG
CATCGCGTGCTTCGATCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTGAAGATCGCCGAGCCCGCGGCCGATCTCGCGG
TGCTGCTCGCGATTCACTCGTCGATGCGCAACAAGGCGTTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTCGGCCTGGCC
GGCGAGATCCGCCCGTCGCCGCGCGGGCAGGAGCGCTTGCGCGAGGCCGCGAAGCTCGGCTTCACGACCGCGCTGATTCC
GAAGGCGAACGCGCCCAAGCAGGCGATCGAGGGGCTGAACGTGATGGCGGTCGAGCGGCTCGAGCAGGCGATCGACCGCG
TGCGCGGCCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-222)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(365-452)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.138

100

0.498
  radA Streptococcus pneumoniae Rx1

46.421

100

0.467
  radA Streptococcus pneumoniae D39

46.421

100

0.467
  radA Streptococcus pneumoniae R6

46.421

100

0.467
  radA Streptococcus pneumoniae TIGR4

46.421

100

0.467
  radA Streptococcus mitis SK321

46.799

98.908

0.463
  radA Streptococcus mitis NCTC 12261

46.578

98.908

0.461