Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0Y85_RS16690 Genome accession   NZ_CP090766
Coordinates   1311661..1313037 (+) Length   458 a.a.
NCBI ID   WP_006402627.1    Uniprot ID   A0A0H3KFV1
Organism   Burkholderia multivorans strain 2008Ycf542     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1306661..1318037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y85_RS16670 (L0Y85_16670) - 1307184..1308167 (+) 984 WP_105835973.1 DUF1853 family protein -
  L0Y85_RS16675 (L0Y85_16675) thiD 1308186..1308995 (-) 810 WP_054317089.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L0Y85_RS16680 (L0Y85_16680) lplT 1309054..1310361 (-) 1308 WP_006402624.1 lysophospholipid transporter LplT -
  L0Y85_RS16685 (L0Y85_16685) alr 1310580..1311650 (+) 1071 WP_035951144.1 alanine racemase -
  L0Y85_RS16690 (L0Y85_16690) radA 1311661..1313037 (+) 1377 WP_006402627.1 DNA repair protein RadA Machinery gene
  L0Y85_RS16695 (L0Y85_16695) - 1313175..1313441 (+) 267 WP_006402628.1 DUF2866 domain-containing protein -
  L0Y85_RS16700 (L0Y85_16700) - 1313488..1315419 (-) 1932 WP_105835970.1 ATP-binding cassette domain-containing protein -
  L0Y85_RS16705 (L0Y85_16705) - 1315555..1316034 (+) 480 WP_105835969.1 glutathione peroxidase -
  L0Y85_RS16710 (L0Y85_16710) cls 1316076..1317515 (-) 1440 WP_105835968.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48753.25 Da        Isoelectric Point: 7.1657

>NTDB_id=644702 L0Y85_RS16690 WP_006402627.1 1311661..1313037(+) (radA) [Burkholderia multivorans strain 2008Ycf542]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPTAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLEGAAPAAELKLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKIAEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTTALIPKANAPKQAIEGLNVMAVERLEQAIDRVRGLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=644702 L0Y85_RS16690 WP_006402627.1 1311661..1313037(+) (radA) [Burkholderia multivorans strain 2008Ycf542]
GTGGCAAAACAGAAAACCGTCTATGTCTGCAGCGAGTGCGGCGGACAAACCCCGAAGTGGCAGGGGCAGTGCCCGTCGTG
CCAGGCCTGGAATACGCTCGTCGAATCGGTGGCCGAATCGCCGACCGCCCATCGCTTCCAGTCGCTCGCGAAACGCGCGC
CCGTCCAGCGCCTCGTCGACATCGAGGCGGCCGACGTGCCGCGCTTCTCGACCGGGATCGGCGAATTCGATCGCGTGCTC
GGCGGCGGCCTCGTCGCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTCGCGCTGCTCGAGGGCGCCGCGCCGGCCGCCGAGTTGAAGCTGCTGGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACGCGGAGCGGCCCGACGTCGCGGTGATCGACTCGATCCAGACCGTCTACTCGGAGGCGCTGACCTCCGC
ACCGGGCTCGGTCGCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACGCGCATCGCGAAACAGTCGGGCACCGCGATCATCA
TGGTCGGCCACGTGACGAAGGAGGGCAACCTCGCGGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGATACGCACTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCCGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAACCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAAGTCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAGGGCACGCGCCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGATACCGCGCACGTG
CCGAATCCGCGCCGGCTCGCGGTCGGCCTCGAACAGAACCGGCTCGCGATGCTGCTCGCCGTGCTGCACCGGCATGCGGG
CATCGCGTGCTTCGATCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTGAAGATCGCCGAGCCCGCGGCCGATCTCGCGG
TGCTGCTCGCGATTCACTCGTCGATGCGCAACAAGGCGTTGCCGAAGGGGCTGATCGTCTTCGGCGAAGTCGGCCTGGCC
GGCGAGATCCGCCCGTCGCCGCGCGGGCAGGAGCGCTTGCGCGAGGCCGCGAAGCTCGGCTTCACGACCGCGCTGATTCC
GAAGGCGAATGCGCCCAAGCAGGCGATCGAAGGGCTGAACGTGATGGCGGTCGAGCGGCTCGAGCAGGCGATCGACCGCG
TGCGCGGCCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-222)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(365-452)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3KFV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.353

100

0.5
  radA Streptococcus pneumoniae Rx1

46.204

100

0.465
  radA Streptococcus pneumoniae D39

46.204

100

0.465
  radA Streptococcus pneumoniae R6

46.204

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.204

100

0.465
  radA Streptococcus mitis SK321

46.578

98.908

0.461
  radA Streptococcus mitis NCTC 12261

46.358

98.908

0.459