Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0Z39_RS12470 Genome accession   NZ_CP090760
Coordinates   1702554..1703930 (+) Length   458 a.a.
NCBI ID   WP_006488230.1    Uniprot ID   B4ECP9
Organism   Burkholderia cenocepacia strain 2009Ycf95III     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1697554..1708930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Z39_RS12450 (L0Z39_12450) - 1698094..1699059 (+) 966 WP_077020252.1 DUF1853 family protein -
  L0Z39_RS12455 (L0Z39_12455) thiD 1699078..1699887 (-) 810 WP_077020251.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L0Z39_RS12460 (L0Z39_12460) lplT 1699946..1701253 (-) 1308 WP_006488251.1 lysophospholipid transporter LplT -
  L0Z39_RS12465 (L0Z39_12465) alr 1701472..1702542 (+) 1071 WP_006488243.1 alanine racemase -
  L0Z39_RS12470 (L0Z39_12470) radA 1702554..1703930 (+) 1377 WP_006488230.1 DNA repair protein RadA Machinery gene
  L0Z39_RS12475 (L0Z39_12475) - 1704080..1704346 (+) 267 WP_006488228.1 DUF2866 domain-containing protein -
  L0Z39_RS12480 (L0Z39_12480) - 1704537..1706468 (-) 1932 WP_048989265.1 ATP-binding cassette domain-containing protein -
  L0Z39_RS12485 (L0Z39_12485) - 1706605..1707084 (+) 480 WP_006498673.1 glutathione peroxidase -
  L0Z39_RS12490 (L0Z39_12490) cls 1707143..1708582 (-) 1440 WP_205670943.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48777.17 Da        Isoelectric Point: 6.9556

>NTDB_id=644674 L0Z39_RS12470 WP_006488230.1 1702554..1703930(+) (radA) [Burkholderia cenocepacia strain 2009Ycf95III]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPAAHRFQSLAKRAPVQRLADIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGAPAAELKLLAEIQLEKIQ
AAIDTERPDVAVIDSIQTVYSDALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIAAFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTSALIPKANAPKQPIEGLNVMAVERLEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=644674 L0Z39_RS12470 WP_006488230.1 1702554..1703930(+) (radA) [Burkholderia cenocepacia strain 2009Ycf95III]
GTGGCCAAACAGAAAACCGTTTACGTCTGCAGCGAGTGCGGCGGACAGACCCCGAAGTGGCAGGGGCAGTGCCCGTCGTG
CCAGGCCTGGAACACCCTCGTCGAATCGGTCGCCGAGTCGCCGGCCGCCCATCGGTTCCAGTCGCTCGCGAAGCGGGCGC
CGGTGCAGCGGCTCGCCGACATCGAGGCCGCCGACGTCCCGCGCTTCTCCACCGGCATCGGCGAATTCGACCGCGTGCTG
GGCGGCGGGCTGGTGCCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGATATCGCGAGCGAGCGGCGCGCGCTCTATATCAGTGGCGAGGAATCGGCCGCGCAGATCGCATTGCGCGCGC
AACGGCTCGCATTGCTCGACGGCGGCGCGCCGGCTGCCGAACTGAAGCTGCTCGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGATACGGAGCGGCCGGACGTGGCCGTCATCGACTCGATCCAGACCGTCTATTCGGACGCGCTCACGTCGGC
GCCCGGCTCGGTCGCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCGAAACAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAGGGCAACCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGACACGCACTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTAGCCAACCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAGGTCGTACCCG
GGTCGTGCGTGCTCGTCACGCAGGAAGGCACGCGCCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGATACCGCGCACGTC
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAACAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGCCACGCGGG
CATCGCGGCCTTCGATCAGGACGTGTTCCTCAATGCGGTGGGCGGCGTCAAGATCACCGAGCCGGCCGCCGACCTCGCGG
TGCTGCTCGCGATTCACTCGTCGATGCGCAACAAGGCGCTGCCGAAAGGGCTGATCGTGTTCGGCGAGGTGGGGCTGGCG
GGCGAGATCCGGCCGTCCCCGCGCGGGCAGGAACGGCTGCGCGAAGCGGCGAAGCTCGGCTTCACGTCCGCGCTGATTCC
GAAGGCGAATGCGCCGAAACAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGAGCGGCTCGAGCAGGCGATCGACCGCG
TGCGCGATCTTGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4ECP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.675

100

0.5
  radA Streptococcus mitis SK321

47.162

100

0.472
  radA Streptococcus pneumoniae Rx1

46.855

100

0.472
  radA Streptococcus pneumoniae D39

46.855

100

0.472
  radA Streptococcus pneumoniae R6

46.855

100

0.472
  radA Streptococcus pneumoniae TIGR4

46.855

100

0.472
  radA Streptococcus mitis NCTC 12261

46.827

99.782

0.467