Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0Z02_RS06410 Genome accession   NZ_CP090747
Coordinates   1358564..1359940 (+) Length   458 a.a.
NCBI ID   WP_105792865.1    Uniprot ID   -
Organism   Burkholderia multivorans strain 2010Ycf503     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1353564..1364940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Z02_RS06390 (L0Z02_06390) - 1354087..1355070 (+) 984 WP_249467355.1 DUF1853 family protein -
  L0Z02_RS06395 (L0Z02_06395) thiD 1355089..1355898 (-) 810 WP_006407725.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L0Z02_RS06400 (L0Z02_06400) lplT 1355957..1357264 (-) 1308 WP_006407724.1 lysophospholipid transporter LplT -
  L0Z02_RS06405 (L0Z02_06405) alr 1357483..1358553 (+) 1071 WP_006402626.1 alanine racemase -
  L0Z02_RS06410 (L0Z02_06410) radA 1358564..1359940 (+) 1377 WP_105792865.1 DNA repair protein RadA Machinery gene
  L0Z02_RS06415 (L0Z02_06415) - 1360076..1360342 (+) 267 WP_006407722.1 DUF2866 domain-containing protein -
  L0Z02_RS06420 (L0Z02_06420) - 1360381..1362312 (-) 1932 WP_006407721.1 ATP-binding cassette domain-containing protein -
  L0Z02_RS06425 (L0Z02_06425) - 1362448..1362927 (+) 480 WP_006402630.1 glutathione peroxidase -
  L0Z02_RS06430 (L0Z02_06430) cls 1362965..1364404 (-) 1440 WP_249467358.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48709.19 Da        Isoelectric Point: 7.1656

>NTDB_id=644627 L0Z02_RS06410 WP_105792865.1 1358564..1359940(+) (radA) [Burkholderia multivorans strain 2010Ycf503]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPAAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGAAPAAELKLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKIAEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTTALIPKANAPKQAIEGLNVMAVERLEQAIDRVRGLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=644627 L0Z02_RS06410 WP_105792865.1 1358564..1359940(+) (radA) [Burkholderia multivorans strain 2010Ycf503]
GTGGCAAAACAGAAAACCGTCTATGTCTGCAGCGAGTGCGGCGGACAAACCCCGAAGTGGCAGGGGCAGTGCCCGTCGTG
TCAGGCCTGGAATACGCTCGTCGAATCGGTCGCCGAATCGCCGGCCGCCCATCGCTTCCAGTCGCTCGCGAAACGTGCGC
CCGTCCAGCGCCTCGTCGACATCGAAGCGGCCGACGTGCCGCGCTTCTCGACCGGGATCGGCGAATTCGATCGCGTGCTC
GGCGGCGGCCTCGTCGCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGCGAGGAGTCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTCGCGCTGCTCGACGGTGCCGCGCCGGCCGCCGAGCTGAAGCTGCTGGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACGCGGAGCGGCCCGACGTCGCGGTGATCGACTCGATCCAGACCGTCTACTCGGAGGCGCTGACCTCCGC
ACCGGGCTCGGTCGCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACGCGCATCGCGAAACAGTCGGGTACCGCGATCATCA
TGGTCGGCCACGTGACGAAGGAGGGCAACCTCGCGGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGATACGCACTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAACCCGTCGGCACTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAGGGCACGCGCCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGACACTGCGCACGTG
CCGAATCCGCGCCGGCTCGCGGTTGGCCTCGAACAGAACCGGCTCGCGATGCTGCTCGCCGTGCTGCACCGGCATGCGGG
CATCGCGTGCTTCGATCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTGAAGATCGCCGAGCCCGCGGCCGATCTCGCGG
TGCTGCTCGCGATTCACTCGTCGATGCGCAACAAGGCGTTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTCGGCCTGGCC
GGCGAGATCCGCCCGTCGCCGCGCGGGCAGGAGCGCTTGCGCGAGGCCGCGAAGCTCGGCTTCACGACCGCGCTGATTCC
GAAGGCGAACGCGCCCAAGCAGGCGATCGAGGGGCTGAACGTGATGGCGGTCGAGCGGCTCGAGCAGGCGATCGACCGCG
TGCGCGGCCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-222)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(365-452)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.353

100

0.5
  radA Streptococcus pneumoniae Rx1

46.421

100

0.467
  radA Streptococcus pneumoniae D39

46.421

100

0.467
  radA Streptococcus pneumoniae R6

46.421

100

0.467
  radA Streptococcus pneumoniae TIGR4

46.421

100

0.467
  radA Streptococcus mitis SK321

46.799

98.908

0.463
  radA Streptococcus mitis NCTC 12261

46.578

98.908

0.461