Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0Z05_RS08090 Genome accession   NZ_CP090730
Coordinates   1706568..1707944 (+) Length   458 a.a.
NCBI ID   WP_059490088.1    Uniprot ID   -
Organism   Burkholderia cepacia strain 2011Ycf793I     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1701568..1712944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Z05_RS08070 (L0Z05_08070) - 1702108..1703073 (+) 966 WP_249453274.1 DUF1853 family protein -
  L0Z05_RS08075 (L0Z05_08075) thiD 1703092..1703901 (-) 810 WP_059624097.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L0Z05_RS08080 (L0Z05_08080) lplT 1703960..1705267 (-) 1308 WP_021159085.1 lysophospholipid transporter LplT -
  L0Z05_RS08085 (L0Z05_08085) alr 1705486..1706556 (+) 1071 WP_021159086.1 alanine racemase -
  L0Z05_RS08090 (L0Z05_08090) radA 1706568..1707944 (+) 1377 WP_059490088.1 DNA repair protein RadA Machinery gene
  L0Z05_RS08095 (L0Z05_08095) - 1708091..1708357 (+) 267 WP_021159088.1 DUF2866 domain-containing protein -
  L0Z05_RS08100 (L0Z05_08100) - 1708563..1710494 (-) 1932 WP_060049166.1 ATP-binding cassette domain-containing protein -
  L0Z05_RS08105 (L0Z05_08105) - 1710631..1711110 (+) 480 WP_249453275.1 glutathione peroxidase -
  L0Z05_RS08110 (L0Z05_08110) cls 1711171..1712610 (-) 1440 WP_021159091.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48893.30 Da        Isoelectric Point: 6.7607

>NTDB_id=644553 L0Z05_RS08090 WP_059490088.1 1706568..1707944(+) (radA) [Burkholderia cepacia strain 2011Ycf793I]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVPEAPSAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGAPADELKLLAEIQLEKIQ
AAIDTERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEVQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTSALIPKANAPKQPIEGLNVMAVDRLEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=644553 L0Z05_RS08090 WP_059490088.1 1706568..1707944(+) (radA) [Burkholderia cepacia strain 2011Ycf793I]
GTGGCCAAACAGAAAACCGTATACGTCTGCAGCGAGTGCGGCGGACAGACCCCGAAGTGGCAAGGGCAATGCCCGTCGTG
CCAGGCCTGGAATACGCTCGTCGAATCGGTTCCTGAGGCGCCGTCGGCCCATCGTTTCCAGTCGCTCGCCAAGCGTGCGC
CCGTGCAGCGTCTCGTCGACATCGAAGCTGCCGACGTGCCGCGCTTCTCCACCGGCATCGGCGAATTCGACCGCGTGCTC
GGCGGCGGGCTCGTGCCGGGCGGCGTCGTACTGATCGGCGGCGACCCGGGTATCGGCAAATCGACGCTGCTGCTGCAGTC
GCTTGCGGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGTGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTTGCGCTGCTCGACGGCGGTGCGCCGGCGGACGAACTGAAGCTGCTCGCGGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACACGGAACGGCCGGACGTGGCCGTGATCGACTCGATCCAGACCGTCTATTCGGAAGCGCTCACGTCGGC
CCCCGGCTCCGTCGCGCAGGTGCGGGAATGCGCGGCGCAGCTCACGCGCATCGCGAAGCAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAAGGCAACCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGACACGCACTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACGGAGCGCGGGCTGCGCGGCGTCGCGAATCCGTCCGCACTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GCTCGTGCGTGCTCGTTACACAGGAGGGCACGCGCCCGCTGCTCGTCGAAGTCCAGGCGCTCGTCGACACCGCGCACGTG
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAACAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGTCATGCGGG
CATCGCGTGCTTCGACCAGGACGTGTTCCTCAATGCGGTGGGCGGCGTGAAGATCACCGAGCCGGCGGCCGACCTCGCGG
TGCTGCTCGCGATCCATTCGTCGATGCGCAACAAGGCGCTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTGGGGCTGGCG
GGCGAGATCCGGCCGTCGCCGCGCGGGCAGGAGCGGCTGCGCGAGGCCGCGAAGCTCGGTTTCACGTCCGCGCTGATCCC
GAAGGCGAACGCGCCGAAGCAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGATCGGCTCGAGCAGGCGATCGACCGCG
TGCGCGATCTCGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.458

100

0.498
  radA Streptococcus pneumoniae Rx1

47.072

100

0.474
  radA Streptococcus pneumoniae D39

47.072

100

0.474
  radA Streptococcus pneumoniae R6

47.072

100

0.474
  radA Streptococcus pneumoniae TIGR4

47.072

100

0.474
  radA Streptococcus mitis SK321

47.38

100

0.474
  radA Streptococcus mitis NCTC 12261

47.046

99.782

0.469