Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0Z01_RS21840 Genome accession   NZ_CP090699
Coordinates   1308616..1309992 (+) Length   458 a.a.
NCBI ID   WP_059490088.1    Uniprot ID   -
Organism   Burkholderia cepacia strain 2017Y70952565VI     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1303616..1314992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Z01_RS21820 (L0Z01_21820) - 1304156..1305121 (+) 966 WP_249453274.1 DUF1853 family protein -
  L0Z01_RS21825 (L0Z01_21825) thiD 1305140..1305949 (-) 810 WP_059624097.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L0Z01_RS21830 (L0Z01_21830) lplT 1306008..1307315 (-) 1308 WP_021159085.1 lysophospholipid transporter LplT -
  L0Z01_RS21835 (L0Z01_21835) alr 1307534..1308604 (+) 1071 WP_021159086.1 alanine racemase -
  L0Z01_RS21840 (L0Z01_21840) radA 1308616..1309992 (+) 1377 WP_059490088.1 DNA repair protein RadA Machinery gene
  L0Z01_RS21845 (L0Z01_21845) - 1310139..1310405 (+) 267 WP_021159088.1 DUF2866 domain-containing protein -
  L0Z01_RS21850 (L0Z01_21850) - 1310611..1312542 (-) 1932 WP_060049166.1 ATP-binding cassette domain-containing protein -
  L0Z01_RS21855 (L0Z01_21855) - 1312679..1313158 (+) 480 WP_249453275.1 glutathione peroxidase -
  L0Z01_RS21860 (L0Z01_21860) cls 1313219..1314658 (-) 1440 WP_021159091.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48893.30 Da        Isoelectric Point: 6.7607

>NTDB_id=644418 L0Z01_RS21840 WP_059490088.1 1308616..1309992(+) (radA) [Burkholderia cepacia strain 2017Y70952565VI]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVPEAPSAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGAPADELKLLAEIQLEKIQ
AAIDTERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEVQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTSALIPKANAPKQPIEGLNVMAVDRLEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=644418 L0Z01_RS21840 WP_059490088.1 1308616..1309992(+) (radA) [Burkholderia cepacia strain 2017Y70952565VI]
GTGGCCAAACAGAAAACCGTATACGTCTGCAGCGAGTGCGGCGGACAGACCCCGAAGTGGCAAGGGCAATGCCCGTCGTG
CCAGGCCTGGAATACGCTCGTCGAATCGGTTCCTGAGGCGCCGTCGGCCCATCGTTTCCAGTCGCTCGCCAAGCGTGCGC
CCGTGCAGCGTCTCGTCGACATCGAAGCTGCCGACGTGCCGCGCTTCTCCACCGGCATCGGCGAATTCGACCGCGTGCTC
GGCGGCGGGCTCGTGCCGGGCGGCGTCGTACTGATCGGCGGCGACCCGGGTATCGGCAAATCGACGCTGCTGCTGCAGTC
GCTTGCGGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGTGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTTGCGCTGCTCGACGGCGGTGCGCCGGCGGACGAACTGAAGCTGCTCGCGGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACACGGAACGGCCGGACGTGGCCGTGATCGACTCGATCCAGACCGTCTATTCGGAAGCGCTCACGTCGGC
CCCCGGCTCCGTCGCGCAGGTGCGGGAATGCGCGGCGCAGCTCACGCGCATCGCGAAGCAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAAGGCAACCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGACACGCACTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACGGAGCGCGGGCTGCGCGGCGTCGCGAATCCGTCCGCACTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GCTCGTGCGTGCTCGTTACACAGGAGGGCACGCGCCCGCTGCTCGTCGAAGTCCAGGCGCTCGTCGACACCGCGCACGTG
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAACAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGTCATGCGGG
CATCGCGTGCTTCGACCAGGACGTGTTCCTCAATGCGGTGGGCGGCGTGAAGATCACCGAGCCGGCGGCCGACCTCGCGG
TGCTGCTCGCGATCCATTCGTCGATGCGCAACAAGGCGCTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTGGGGCTGGCG
GGCGAGATCCGGCCGTCGCCGCGCGGGCAGGAGCGGCTGCGCGAGGCCGCGAAGCTCGGTTTCACGTCCGCGCTGATCCC
GAAGGCGAACGCGCCGAAGCAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGATCGGCTCGAGCAGGCGATCGACCGCG
TGCGCGATCTCGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.458

100

0.498
  radA Streptococcus pneumoniae Rx1

47.072

100

0.474
  radA Streptococcus pneumoniae D39

47.072

100

0.474
  radA Streptococcus pneumoniae R6

47.072

100

0.474
  radA Streptococcus pneumoniae TIGR4

47.072

100

0.474
  radA Streptococcus mitis SK321

47.38

100

0.474
  radA Streptococcus mitis NCTC 12261

47.046

99.782

0.469