Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0Y98_RS05885 Genome accession   NZ_CP090692
Coordinates   1248962..1250338 (+) Length   458 a.a.
NCBI ID   WP_105825803.1    Uniprot ID   -
Organism   Burkholderia multivorans strain 2017Y71079786     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1243962..1255338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y98_RS05865 (L0Y98_05865) - 1244494..1245468 (+) 975 WP_155824380.1 DUF1853 family protein -
  L0Y98_RS05870 (L0Y98_05870) thiD 1245487..1246296 (-) 810 WP_155824379.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L0Y98_RS05875 (L0Y98_05875) lplT 1246355..1247662 (-) 1308 WP_006402624.1 lysophospholipid transporter LplT -
  L0Y98_RS05880 (L0Y98_05880) alr 1247881..1248951 (+) 1071 WP_155824378.1 alanine racemase -
  L0Y98_RS05885 (L0Y98_05885) radA 1248962..1250338 (+) 1377 WP_105825803.1 DNA repair protein RadA Machinery gene
  L0Y98_RS05890 (L0Y98_05890) - 1250476..1250742 (+) 267 WP_006402628.1 DUF2866 domain-containing protein -
  L0Y98_RS05895 (L0Y98_05895) - 1250801..1252732 (-) 1932 WP_012213128.1 ATP-binding cassette domain-containing protein -
  L0Y98_RS05900 (L0Y98_05900) - 1252868..1253347 (+) 480 WP_059783370.1 glutathione peroxidase -
  L0Y98_RS05905 (L0Y98_05905) cls 1253389..1254828 (-) 1440 WP_006402631.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48762.26 Da        Isoelectric Point: 7.2044

>NTDB_id=644388 L0Y98_RS05885 WP_105825803.1 1248962..1250338(+) (radA) [Burkholderia multivorans strain 2017Y71079786]
MAKQKTVYVCSECGGQTPKWQGQCPSCHAWNTLVESVAESPTAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLEGAAPAAELKLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKIAEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTTALIPKANAPKQAIEGLNVMAVERLEQAIDRVRGLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=644388 L0Y98_RS05885 WP_105825803.1 1248962..1250338(+) (radA) [Burkholderia multivorans strain 2017Y71079786]
GTGGCAAAACAGAAAACCGTCTATGTCTGCAGCGAGTGCGGCGGACAAACCCCGAAGTGGCAGGGGCAGTGCCCGTCGTG
CCACGCCTGGAATACGCTCGTCGAATCGGTCGCCGAATCGCCGACCGCCCATCGCTTCCAGTCGCTTGCGAAACGGGCGC
CCGTCCAGCGTCTCGTCGACATCGAGGCGGCCGACGTGCCGCGCTTCTCGACCGGGATCGGCGAATTCGATCGCGTGCTC
GGCGGCGGCCTCGTCGCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTCGCGCTGCTCGAGGGCGCCGCGCCGGCCGCCGAGTTGAAGCTGCTGGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACGCGGAGCGGCCCGACGTCGCGGTGATTGACTCGATCCAGACCGTCTACTCGGAGGCGCTGACCTCCGC
ACCGGGCTCGGTCGCGCAAGTGCGCGAGTGCGCGGCGCAACTCACGCGCATCGCGAAACAGTCGGGCACCGCGATCATCA
TGGTCGGCCACGTGACGAAGGAGGGCAACCTCGCGGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGATACGCACTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCCGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAACCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAAGTCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAGGGCACGCGCCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGATACCGCGCACGTG
CCGAATCCGCGCCGGCTCGCGGTCGGCCTCGAGCAGAACCGGCTCGCGATGCTGCTCGCCGTGCTGCACCGGCATGCGGG
CATCGCGTGCTTCGATCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTGAAGATCGCCGAGCCCGCGGCCGATCTCGCGG
TGCTGCTCGCGATTCACTCGTCAATGCGCAACAAGGCGTTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTCGGCCTGGCC
GGCGAGATCCGCCCCTCGCCGCGCGGGCAGGAGCGCTTGCGCGAGGCCGCGAAGCTCGGCTTCACGACCGCGCTGATTCC
GAAGGCGAACGCGCCCAAGCAGGCGATCGAAGGGCTGAACGTGATGGCGGTCGAGCGGCTCGAGCAGGCGATCGACCGCG
TGCGCGGCCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(76-222)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(365-452)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.353

100

0.5
  radA Streptococcus pneumoniae Rx1

46.204

100

0.465
  radA Streptococcus pneumoniae D39

46.204

100

0.465
  radA Streptococcus pneumoniae R6

46.204

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.204

100

0.465
  radA Streptococcus mitis SK321

46.578

98.908

0.461
  radA Streptococcus mitis NCTC 12261

46.358

98.908

0.459