Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IUB69_RS20870 Genome accession   NZ_ABACVG020000001
Coordinates   4419901..4420530 (+) Length   209 a.a.
NCBI ID   WP_032183880.1    Uniprot ID   -
Organism   Escherichia coli strain 2020CK-00188     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4414901..4425530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUB69_RS20850 (IUB69_020795) ycbZ 4415302..4417062 (-) 1761 WP_032183878.1 AAA family ATPase -
  IUB69_RS20855 (IUB69_020800) matP 4417248..4417700 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  IUB69_RS20860 (IUB69_020805) ompA 4417776..4418816 (-) 1041 WP_001314606.1 porin OmpA -
  IUB69_RS20865 (IUB69_020810) sulA 4419173..4419682 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  IUB69_RS20870 (IUB69_020815) sxy/tfoX 4419901..4420530 (+) 630 WP_032183880.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IUB69_RS20875 (IUB69_020820) yccS 4420493..4422655 (-) 2163 WP_000875038.1 YccS family putative transporter -
  IUB69_RS20880 (IUB69_020825) yccF 4422665..4423111 (-) 447 WP_270097847.1 YccF domain-containing protein -
  IUB69_RS20885 (IUB69_020830) helD 4423234..4425288 (+) 2055 WP_032183881.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24136.98 Da        Isoelectric Point: 9.2180

>NTDB_id=64438 IUB69_RS20870 WP_032183880.1 4419901..4420530(+) (sxy/tfoX) [Escherichia coli strain 2020CK-00188]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHSPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=64438 IUB69_RS20870 WP_032183880.1 4419901..4420530(+) (sxy/tfoX) [Escherichia coli strain 2020CK-00188]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATTCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATACTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment