Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0Z03_RS20430 Genome accession   NZ_CP090682
Coordinates   2154647..2156023 (-) Length   458 a.a.
NCBI ID   WP_006402627.1    Uniprot ID   A0A0H3KFV1
Organism   Burkholderia multivorans strain 2019Y71417852IX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2149647..2161023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Z03_RS20410 (L0Z03_20410) cls 2150169..2151608 (+) 1440 WP_105835968.1 cardiolipin synthase -
  L0Z03_RS20415 (L0Z03_20415) - 2151650..2152129 (-) 480 WP_105835969.1 glutathione peroxidase -
  L0Z03_RS20420 (L0Z03_20420) - 2152265..2154196 (+) 1932 WP_105835970.1 ATP-binding cassette domain-containing protein -
  L0Z03_RS20425 (L0Z03_20425) - 2154243..2154509 (-) 267 WP_006402628.1 DUF2866 domain-containing protein -
  L0Z03_RS20430 (L0Z03_20430) radA 2154647..2156023 (-) 1377 WP_006402627.1 DNA repair protein RadA Machinery gene
  L0Z03_RS20435 (L0Z03_20435) alr 2156034..2157104 (-) 1071 WP_035951144.1 alanine racemase -
  L0Z03_RS20440 (L0Z03_20440) lplT 2157323..2158630 (+) 1308 WP_006402624.1 lysophospholipid transporter LplT -
  L0Z03_RS20445 (L0Z03_20445) thiD 2158689..2159498 (+) 810 WP_054317089.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L0Z03_RS20450 (L0Z03_20450) - 2159517..2160500 (-) 984 WP_105835973.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48753.25 Da        Isoelectric Point: 7.1657

>NTDB_id=644346 L0Z03_RS20430 WP_006402627.1 2154647..2156023(-) (radA) [Burkholderia multivorans strain 2019Y71417852IX]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPTAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLEGAAPAAELKLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKIAEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTTALIPKANAPKQAIEGLNVMAVERLEQAIDRVRGLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=644346 L0Z03_RS20430 WP_006402627.1 2154647..2156023(-) (radA) [Burkholderia multivorans strain 2019Y71417852IX]
GTGGCAAAACAGAAAACCGTCTATGTCTGCAGCGAGTGCGGCGGACAAACCCCGAAGTGGCAGGGGCAGTGCCCGTCGTG
CCAGGCCTGGAATACGCTCGTCGAATCGGTGGCCGAATCGCCGACCGCCCATCGCTTCCAGTCGCTCGCGAAACGCGCGC
CCGTCCAGCGCCTCGTCGACATCGAGGCGGCCGACGTGCCGCGCTTCTCGACCGGGATCGGCGAATTCGATCGCGTGCTC
GGCGGCGGCCTCGTCGCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTCGCGCTGCTCGAGGGCGCCGCGCCGGCCGCCGAGTTGAAGCTGCTGGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACGCGGAGCGGCCCGACGTCGCGGTGATCGACTCGATCCAGACCGTCTACTCGGAGGCGCTGACCTCCGC
ACCGGGCTCGGTCGCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACGCGCATCGCGAAACAGTCGGGCACCGCGATCATCA
TGGTCGGCCACGTGACGAAGGAGGGCAACCTCGCGGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGATACGCACTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCCGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAACCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAAGTCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAGGGCACGCGCCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGATACCGCGCACGTG
CCGAATCCGCGCCGGCTCGCGGTCGGCCTCGAACAGAACCGGCTCGCGATGCTGCTCGCCGTGCTGCACCGGCATGCGGG
CATCGCGTGCTTCGATCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTGAAGATCGCCGAGCCCGCGGCCGATCTCGCGG
TGCTGCTCGCGATTCACTCGTCGATGCGCAACAAGGCGTTGCCGAAGGGGCTGATCGTCTTCGGCGAAGTCGGCCTGGCC
GGCGAGATCCGCCCGTCGCCGCGCGGGCAGGAGCGCTTGCGCGAGGCCGCGAAGCTCGGCTTCACGACCGCGCTGATTCC
GAAGGCGAATGCGCCCAAGCAGGCGATCGAAGGGCTGAACGTGATGGCGGTCGAGCGGCTCGAGCAGGCGATCGACCGCG
TGCGCGGCCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-222)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(365-452)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3KFV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.353

100

0.5
  radA Streptococcus pneumoniae Rx1

46.204

100

0.465
  radA Streptococcus pneumoniae D39

46.204

100

0.465
  radA Streptococcus pneumoniae R6

46.204

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.204

100

0.465
  radA Streptococcus mitis SK321

46.578

98.908

0.461
  radA Streptococcus mitis NCTC 12261

46.358

98.908

0.459