Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OIO43_RS10265 Genome accession   NZ_CP107599
Coordinates   2167795..2168430 (-) Length   211 a.a.
NCBI ID   WP_000264029.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326584     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2162795..2173430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO43_RS10240 (OIO43_10240) - 2162851..2163831 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  OIO43_RS10245 (OIO43_10245) kdsB 2163843..2164604 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OIO43_RS10250 (OIO43_10250) lpxK 2164614..2165624 (-) 1011 WP_000050463.1 tetraacyldisaccharide 4'-kinase -
  OIO43_RS10255 (OIO43_10255) msbA 2165627..2167354 (-) 1728 WP_001070731.1 lipid A export permease/ATP-binding protein MsbA -
  OIO43_RS10260 (OIO43_10260) - 2167351..2167779 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  OIO43_RS10265 (OIO43_10265) exbB 2167795..2168430 (-) 636 WP_000264029.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OIO43_RS10270 (OIO43_10270) - 2168480..2169367 (-) 888 WP_000023428.1 ParB/RepB/Spo0J family partition protein -
  OIO43_RS10275 (OIO43_10275) - 2169364..2170146 (-) 783 WP_000057212.1 ParA family protein -
  OIO43_RS10280 (OIO43_10280) rsmG 2170168..2170800 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  OIO43_RS10285 (OIO43_10285) murU 2170888..2171577 (-) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  OIO43_RS10290 (OIO43_10290) - 2171577..2172590 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23170.04 Da        Isoelectric Point: 6.4861

>NTDB_id=644334 OIO43_RS10265 WP_000264029.1 2167795..2168430(-) (exbB) [Acinetobacter baumannii strain 1326584]
MWELVKAGGWLMLPLILCSILTAAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=644334 OIO43_RS10265 WP_000264029.1 2167795..2168430(-) (exbB) [Acinetobacter baumannii strain 1326584]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGCCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGACACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393