Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OIO43_RS08240 Genome accession   NZ_CP107599
Coordinates   1736893..1737999 (+) Length   368 a.a.
NCBI ID   WP_001187341.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326584     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1731893..1742999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO43_RS08200 (OIO43_08200) - 1731971..1732294 (+) 324 WP_000121846.1 hypothetical protein -
  OIO43_RS08205 (OIO43_08205) grxD 1732341..1732682 (-) 342 WP_000138830.1 Grx4 family monothiol glutaredoxin -
  OIO43_RS08210 (OIO43_08210) - 1732910..1734118 (+) 1209 WP_000129945.1 aspartate aminotransferase family protein -
  OIO43_RS08215 (OIO43_08215) - 1734169..1734600 (-) 432 WP_000156920.1 CBS domain-containing protein -
  OIO43_RS08220 (OIO43_08220) - 1734741..1735115 (-) 375 WP_001087274.1 DUF2750 domain-containing protein -
  OIO43_RS08225 (OIO43_08225) - 1735550..1735783 (-) 234 WP_000616034.1 hypothetical protein -
  OIO43_RS08230 (OIO43_08230) - 1735999..1736358 (+) 360 WP_000185571.1 hypothetical protein -
  OIO43_RS08235 (OIO43_08235) - 1736459..1736785 (+) 327 WP_000955082.1 hypothetical protein -
  OIO43_RS08240 (OIO43_08240) pilA 1736893..1737999 (+) 1107 WP_001187341.1 signal recognition particle-docking protein FtsY Machinery gene
  OIO43_RS08245 (OIO43_08245) - 1738189..1738785 (+) 597 WP_000102943.1 nitroreductase family protein -
  OIO43_RS08250 (OIO43_08250) - 1739011..1739682 (+) 672 WP_000175342.1 DUF2057 family protein -
  OIO43_RS08255 (OIO43_08255) - 1739755..1740279 (+) 525 WP_000593800.1 GNAT family N-acetyltransferase -
  OIO43_RS08260 (OIO43_08260) - 1740292..1740591 (-) 300 WP_085916945.1 cyd operon YbgE family protein -
  OIO43_RS08265 (OIO43_08265) cydX 1740592..1740693 (-) 102 WP_000270276.1 cytochrome bd-I oxidase subunit CydX -
  OIO43_RS08270 (OIO43_08270) cydB 1740707..1741852 (-) 1146 WP_000575168.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39905.69 Da        Isoelectric Point: 4.9837

>NTDB_id=644325 OIO43_RS08240 WP_001187341.1 1736893..1737999(+) (pilA) [Acinetobacter baumannii strain 1326584]
MQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPEQPKSGFFGRMKEGLSKTRRNFT
DGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDP
NKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFE
SARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLD
GTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETDK

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=644325 OIO43_RS08240 WP_001187341.1 1736893..1737999(+) (pilA) [Acinetobacter baumannii strain 1326584]
ATGCAACAACAATCGAATATGCAAAATAAATTCTTGATAGATGCTGAGATCGGGGATGACGATGTCACATTGCCTAATTT
ACCTGCTATCGATGTTCCTATCGTTGAGTCACCTGTTAAGCAAGAAGTAAAAGCTGAAGAAGTTGTCGAGGCTGCACCTT
CTACAGAACCTGAGCAACCAAAATCTGGTTTCTTTGGACGAATGAAAGAAGGCTTGAGCAAAACTCGTCGTAATTTCACC
GATGGTATGGTTAATATCTTAATTGGTGGGAAAGAAATTGATGATGAGTTGCTTGAAGAAGTCGAAGAGCAATTATTAGT
TGCAGATATTGGTGTTGATGCAACAAAAACGATTATTACCAACTTAACTGAACGTACTGCTCGTGGTGATTTGATCTATT
CACATTCACTTTATAAAGCCTTGCAAGAAGAGTTGGTTGCTTTGCTTGCTCCACGCGTGAAGCCTTTACATATTGACCCT
AATAAATCACCTTATGTGATTTTAATGGTTGGGGTAAATGGTGTTGGAAAAACAACAACAATTGGTAAGTTGGCGAAGCG
TTTACAAGGTGAAGGCAAAAAAGTGATGTTGGCGGCAGGTGATACATTCCGTGCTGCTGCTACTGAACAATTGCAAATCT
GGGGTGAGCGTAACGATATTGCTGTTGTTGCTCAAGGTCATGGTGCCGATAGTGCATCAGTTATTTTTGATGCTTTTGAA
AGTGCGCGAGCTAAAGGTATTGATGTACTGATTGCAGATACTGCGGGCCGTTTGCATAACAAAAGTAATTTGATGGAAGA
GCTTAAGAAAGTTAAGCGTGTTATGCAAAAAATTGATGCAACAGCGCCTCATGAAATTATGTTGGTTGTAGATGCGGGTA
CTGGACAAAATGCAATCAACCAAGTACAAGAATTTGACCAGGCTGTCGGTTTAACAGGTATTACCATTACTAAGTTGGAT
GGTACAGCAAAAGGTGGAGTATTATTTAATATTGCTAGTCGTACTCATGTGCCAATTCGCTTCATTGGTGTGGGTGAAAA
AATTGATGATTTAAGACCATTCTCGGCGAAATCGTTTGTTGCAGCACTATTTGAAACTGATAAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(83-145)

SRP54-type protein, GTPase domain (SRP54)

(165-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.038

86.685

0.451