Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OIO78_RS09930 Genome accession   NZ_CP107597
Coordinates   2091234..2091869 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain 1326581-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2086234..2096869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO78_RS09905 (OIO78_09905) - 2086290..2087270 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  OIO78_RS09910 (OIO78_09910) kdsB 2087282..2088043 (-) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OIO78_RS09915 (OIO78_09915) lpxK 2088053..2089063 (-) 1011 WP_031960446.1 tetraacyldisaccharide 4'-kinase -
  OIO78_RS09920 (OIO78_09920) msbA 2089066..2090793 (-) 1728 WP_031960445.1 lipid A export permease/ATP-binding protein MsbA -
  OIO78_RS09925 (OIO78_09925) - 2090790..2091218 (-) 429 WP_000669685.1 biopolymer transporter ExbD -
  OIO78_RS09930 (OIO78_09930) exbB 2091234..2091869 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OIO78_RS09935 (OIO78_09935) - 2091919..2092806 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  OIO78_RS09940 (OIO78_09940) - 2092803..2093585 (-) 783 WP_000057212.1 ParA family protein -
  OIO78_RS09945 (OIO78_09945) rsmG 2093607..2094239 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  OIO78_RS09950 (OIO78_09950) murU 2094327..2095016 (-) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  OIO78_RS09955 (OIO78_09955) - 2095016..2096029 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=644257 OIO78_RS09930 WP_000264037.1 2091234..2091869(-) (exbB) [Acinetobacter baumannii strain 1326581-2]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=644257 OIO78_RS09930 WP_000264037.1 2091234..2091869(-) (exbB) [Acinetobacter baumannii strain 1326581-2]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCACCTCTACTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTGATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393