Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   L0025_RS06490 Genome accession   NZ_CP090648
Coordinates   1361389..1361946 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA1616     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1356389..1366946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0025_RS06470 (L0025_06470) pilR 1357665..1359002 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  L0025_RS06475 (L0025_06475) thiO 1359048..1360142 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  L0025_RS06480 (L0025_06480) - 1360277..1360786 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  L0025_RS06485 (L0025_06485) - 1360892..1361398 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  L0025_RS06490 (L0025_06490) pilV 1361389..1361946 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  L0025_RS06495 (L0025_06495) pilW 1361943..1362767 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  L0025_RS06500 (L0025_06500) pilX 1362764..1363351 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  L0025_RS06505 (L0025_06505) pilY1 1363363..1366854 (+) 3492 WP_247383211.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=644202 L0025_RS06490 WP_003119423.1 1361389..1361946(+) (pilV) [Pseudomonas aeruginosa strain PA1616]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=644202 L0025_RS06490 WP_003119423.1 1361389..1361946(+) (pilV) [Pseudomonas aeruginosa strain PA1616]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995