Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   L0024_RS18540 Genome accession   NZ_CP090647
Coordinates   4019411..4020046 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain PA1681     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4014411..4025046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0024_RS18510 (L0024_18505) murB 4015509..4016528 (-) 1020 WP_034017434.1 UDP-N-acetylmuramate dehydrogenase -
  L0024_RS18515 (L0024_18510) - 4016525..4016989 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  L0024_RS18520 (L0024_18515) kdsB 4016989..4017753 (-) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L0024_RS18525 (L0024_18520) - 4017753..4017938 (-) 186 WP_003091157.1 Trm112 family protein -
  L0024_RS18530 (L0024_18525) lpxK 4017976..4018974 (-) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  L0024_RS18535 (L0024_18530) - 4018974..4019414 (-) 441 WP_003091161.1 biopolymer transporter ExbD -
  L0024_RS18540 (L0024_18535) exbB 4019411..4020046 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  L0024_RS18545 (L0024_18540) comA 4020119..4022344 (-) 2226 WP_028681124.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  L0024_RS18550 (L0024_18545) - 4022475..4023008 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  L0024_RS18555 (L0024_18550) - 4023096..4024340 (-) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=644180 L0024_RS18540 WP_003091163.1 4019411..4020046(-) (exbB) [Pseudomonas aeruginosa strain PA1681]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=644180 L0024_RS18540 WP_003091163.1 4019411..4020046(-) (exbB) [Pseudomonas aeruginosa strain PA1681]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGAA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81