Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   L0024_RS04245 Genome accession   NZ_CP090647
Coordinates   903033..903590 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA1681     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 898033..908590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0024_RS04230 (L0024_04230) pilY1 898131..901616 (-) 3486 WP_034016610.1 type 4a pilus biogenesis protein PilY1 -
  L0024_RS04235 (L0024_04235) pilX 901628..902215 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  L0024_RS04240 (L0024_04240) pilW 902212..903036 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  L0024_RS04245 (L0024_04245) pilV 903033..903590 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  L0024_RS04250 (L0024_04250) - 903581..904087 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  L0024_RS04255 (L0024_04255) - 904193..904702 (-) 510 WP_017002065.1 Tfp pilus assembly protein FimT/FimU -
  L0024_RS04260 (L0024_04260) thiO 904837..905931 (+) 1095 WP_020750388.1 glycine oxidase ThiO -
  L0024_RS04265 (L0024_04265) pilR 905977..907314 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=644166 L0024_RS04245 WP_003119423.1 903033..903590(-) (pilV) [Pseudomonas aeruginosa strain PA1681]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=644166 L0024_RS04245 WP_003119423.1 903033..903590(-) (pilV) [Pseudomonas aeruginosa strain PA1681]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995