Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LXE93_RS08310 Genome accession   NZ_CP090632
Coordinates   1803862..1805238 (+) Length   458 a.a.
NCBI ID   WP_039342661.1    Uniprot ID   A0A4R4C5L8
Organism   Burkholderia contaminans strain FFH2055     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1798862..1810238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE93_RS08290 (LXE93_08270) - 1799402..1800367 (+) 966 WP_046546000.1 DUF1853 family protein -
  LXE93_RS08295 (LXE93_08275) thiD 1800386..1801195 (-) 810 WP_046545999.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LXE93_RS08300 (LXE93_08280) lplT 1801254..1802561 (-) 1308 WP_046545998.1 lysophospholipid transporter LplT -
  LXE93_RS08305 (LXE93_08285) alr 1802780..1803850 (+) 1071 WP_046545997.1 alanine racemase -
  LXE93_RS08310 (LXE93_08290) radA 1803862..1805238 (+) 1377 WP_039342661.1 DNA repair protein RadA Machinery gene
  LXE93_RS08315 (LXE93_08295) - 1805385..1805651 (+) 267 WP_039342663.1 DUF2866 domain-containing protein -
  LXE93_RS08320 (LXE93_08300) - 1805849..1807780 (-) 1932 WP_046545996.1 ATP-binding cassette domain-containing protein -
  LXE93_RS08325 (LXE93_08305) - 1807917..1808396 (+) 480 WP_046545995.1 glutathione peroxidase -
  LXE93_RS08330 (LXE93_08310) cls 1808457..1809896 (-) 1440 WP_046545994.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48761.17 Da        Isoelectric Point: 6.9555

>NTDB_id=644122 LXE93_RS08310 WP_039342661.1 1803862..1805238(+) (radA) [Burkholderia contaminans strain FFH2055]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPAAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASARRALYISGEESAAQIALRAQRLALLDGGAPADELKLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIAAFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTSALIPKANAPKQPIEGLNVMAVDRLEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=644122 LXE93_RS08310 WP_039342661.1 1803862..1805238(+) (radA) [Burkholderia contaminans strain FFH2055]
GTGGCCAAACAGAAAACCGTATACGTCTGCAGCGAGTGCGGCGGACAGACCCCGAAGTGGCAGGGCCAATGCCCGTCGTG
CCAGGCCTGGAACACGCTGGTTGAATCGGTCGCCGAATCGCCCGCTGCCCATCGTTTCCAATCGCTCGCGAAGCGGGCGC
CCGTCCAGCGTCTCGTCGACATCGAAGCGGCCGACGTGCCGCGCTTCTCGACCGGCATCGGTGAATTCGACCGCGTGCTC
GGCGGCGGGCTGGTCCCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGATATCGCGAGCGCGCGGCGTGCGCTCTATATCAGCGGTGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGACTTGCGCTGCTCGACGGCGGTGCGCCGGCGGATGAGCTGAAGCTGCTCGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACGCGGAACGGCCGGACGTGGCCGTGATCGACTCGATCCAGACCGTCTATTCGGAAGCGCTCACGTCGGC
GCCGGGCTCGGTCGCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCGAAGCAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAGGGCAACCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACCGTGCTGTACTTC
GAAGGCGACACGCACTCGTCGTTCCGGCTCGTGCGTGCGTTCAAGAACCGCTTCGGTGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAATCCGTCCGCACTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GTTCGTGCGTGCTCGTCACGCAGGAAGGTACGCGCCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGATACGGCGCACGTG
CCGAATCCGCGCCGGCTCGCGGTCGGCCTCGAGCAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGGCACGCAGG
CATCGCGGCCTTCGACCAGGACGTGTTCCTCAATGCCGTGGGCGGCGTGAAGATCACCGAGCCGGCCGCCGACCTCGCGG
TGCTGCTGGCGATCCATTCGTCGATGCGTAACAAGGCGCTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTCGGGCTGGCG
GGCGAGATCCGGCCGTCGCCGCGCGGGCAGGAACGGCTGCGCGAGGCGGCGAAGCTCGGTTTCACGTCCGCGCTGATTCC
GAAGGCGAATGCGCCGAAGCAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGATCGGCTCGAACAGGCAATCGACCGCG
TGCGCGATCTCGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R4C5L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.458

100

0.498
  radA Streptococcus pneumoniae Rx1

46.638

100

0.469
  radA Streptococcus pneumoniae D39

46.638

100

0.469
  radA Streptococcus pneumoniae R6

46.638

100

0.469
  radA Streptococcus pneumoniae TIGR4

46.638

100

0.469
  radA Streptococcus mitis SK321

46.943

100

0.469
  radA Streptococcus mitis NCTC 12261

46.608

99.782

0.465