Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   LZI70_RS15100 Genome accession   NZ_CP090615
Coordinates   290140..291234 (+) Length   364 a.a.
NCBI ID   WP_255232494.1    Uniprot ID   -
Organism   Vibrio pelagius strain WXL662     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 285140..296234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZI70_RS15075 (LZI70_15055) - 285441..288008 (+) 2568 WP_255232776.1 hybrid sensor histidine kinase/response regulator -
  LZI70_RS15080 (LZI70_15060) - 288143..288457 (-) 315 WP_032550242.1 DUF496 family protein -
  LZI70_RS15085 (LZI70_15065) - 288653..288853 (+) 201 WP_255232491.1 hypothetical protein -
  LZI70_RS15090 (LZI70_15070) - 288914..289567 (+) 654 WP_255232492.1 YceH family protein -
  LZI70_RS15095 (LZI70_15075) - 289568..289891 (+) 324 WP_255232493.1 GIY-YIG nuclease family protein -
  LZI70_RS15100 (LZI70_15080) luxP 290140..291234 (+) 1095 WP_255232494.1 substrate-binding domain-containing protein Regulator
  LZI70_RS15105 (LZI70_15085) luxQ 291234..293816 (+) 2583 WP_255232495.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  LZI70_RS15110 (LZI70_15090) - 293871..294530 (-) 660 WP_255232496.1 PilZ domain-containing protein -
  LZI70_RS15115 (LZI70_15095) - 294776..295120 (+) 345 WP_255232497.1 HopJ type III effector protein -
  LZI70_RS15120 (LZI70_15100) - 295199..295507 (-) 309 WP_255232498.1 DUF1289 domain-containing protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41281.55 Da        Isoelectric Point: 5.2966

>NTDB_id=644017 LZI70_RS15100 WP_255232494.1 290140..291234(+) (luxP) [Vibrio pelagius strain WXL662]
MKRSLMLLGASLLSGPAFSHGTHVLNGYWEYQEFLDKFPAQKALTEQMNQAVLSPPVPLQAKQLDPITISVVYPGQQISD
YWVRNIQAFEKRLDKLRINYQINQVFTRVNADLTQQSISLQEAIENKTDYLIFTLDTTRHRKFIEHVLSSTNTKLILQNI
TTPVRAWQERQPFMYVGFDHATGSLKLADYFKTHSRDESEYSVLYRSEGYISDARGDTFIHEISEETDFKLKSSFYTKSD
MESGYKAAKISIERNQDLDFIYACATDVALGAAKAIRESGLDIKLNGWGGGSAELEALARGDLDVTVMRMNDDTGIAMAE
AIKWDLEGFAVPTVYSGDFEVVTKEDSQEHIESLKQRAFRYSGK

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=644017 LZI70_RS15100 WP_255232494.1 290140..291234(+) (luxP) [Vibrio pelagius strain WXL662]
ATGAAACGTTCACTTATGTTGCTAGGGGCTTCGCTATTGTCAGGGCCAGCCTTTTCTCACGGCACTCACGTGCTCAACGG
TTATTGGGAATACCAAGAATTTTTGGATAAGTTTCCAGCACAAAAAGCACTCACTGAACAGATGAACCAAGCTGTGTTGA
GTCCGCCTGTTCCTTTGCAGGCTAAACAGCTTGATCCTATCACCATATCGGTTGTCTATCCTGGTCAACAGATCTCAGAT
TATTGGGTAAGAAATATTCAAGCGTTCGAAAAGCGTTTGGATAAGCTTAGAATCAACTACCAAATCAACCAAGTATTTAC
GCGTGTCAATGCAGATTTGACGCAGCAAAGTATTTCTCTTCAAGAAGCGATAGAGAATAAGACCGATTATCTGATTTTCA
CACTTGATACAACTCGCCATCGTAAATTTATTGAGCATGTTTTGAGCTCAACCAACACCAAGCTGATTTTGCAAAATATC
ACAACACCAGTTCGAGCTTGGCAAGAGCGACAGCCGTTTATGTATGTCGGGTTCGATCATGCTACGGGTAGCCTAAAGTT
GGCGGACTATTTTAAAACTCACTCTAGAGATGAGAGTGAATATTCGGTCCTCTATCGTTCAGAAGGCTACATCAGCGATG
CTCGTGGTGATACATTTATACACGAAATCAGCGAAGAGACAGACTTCAAACTCAAATCCTCCTTTTATACCAAATCTGAT
ATGGAGAGCGGCTATAAAGCGGCCAAGATCAGCATTGAGCGCAATCAGGATCTCGATTTTATCTATGCATGTGCTACCGA
TGTCGCATTAGGTGCCGCTAAAGCCATTCGTGAGTCTGGTTTGGATATTAAACTCAATGGCTGGGGCGGCGGCTCTGCAG
AATTGGAAGCGTTGGCTCGTGGTGATCTAGATGTTACTGTGATGCGAATGAATGACGACACTGGTATCGCGATGGCAGAA
GCGATTAAGTGGGATTTAGAGGGCTTTGCTGTACCTACCGTCTACTCTGGAGACTTTGAGGTTGTGACCAAAGAAGATAG
CCAAGAACATATAGAGTCGCTTAAACAGCGTGCTTTTAGATACTCAGGAAAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.043

100

0.637