Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LZI70_RS13430 Genome accession   NZ_CP090614
Coordinates   2957411..2958835 (-) Length   474 a.a.
NCBI ID   WP_255230614.1    Uniprot ID   -
Organism   Vibrio pelagius strain WXL662     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2952411..2963835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZI70_RS13405 (LZI70_13390) - 2952994..2953647 (+) 654 WP_255230609.1 thiopurine S-methyltransferase -
  LZI70_RS13410 (LZI70_13395) purT 2953731..2954906 (-) 1176 WP_255230610.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  LZI70_RS13415 (LZI70_13400) cdd 2955076..2955963 (-) 888 WP_255230611.1 cytidine deaminase -
  LZI70_RS13420 (LZI70_13405) - 2956280..2956957 (-) 678 WP_255230612.1 LrgB family protein -
  LZI70_RS13425 (LZI70_13410) - 2956959..2957330 (-) 372 WP_255230613.1 CidA/LrgA family protein -
  LZI70_RS13430 (LZI70_13415) sbcB 2957411..2958835 (-) 1425 WP_255230614.1 exodeoxyribonuclease I Machinery gene
  LZI70_RS13435 (LZI70_13420) - 2959035..2959883 (-) 849 WP_255230615.1 sterol desaturase family protein -
  LZI70_RS13440 (LZI70_13425) - 2959949..2960986 (-) 1038 WP_255230616.1 DUF2804 domain-containing protein -
  LZI70_RS13445 (LZI70_13430) - 2961174..2962232 (+) 1059 WP_255230617.1 AraC family transcriptional regulator -
  LZI70_RS13450 (LZI70_13435) - 2962384..2962905 (+) 522 WP_255230618.1 DUF2058 domain-containing protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54682.91 Da        Isoelectric Point: 4.7403

>NTDB_id=644015 LZI70_RS13430 WP_255230614.1 2957411..2958835(-) (sbcB) [Vibrio pelagius strain WXL662]
MSSDNQPTYFFFDYETWGTSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPDGIVWPENEEGFP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKIKAAQPKMFDYLYNMRHKRKLNELIDIINMTPLMHVSGMLGKECNY
TSWIVPMAWHPTNQNAVIVVDLAKDPTPLLELDADELRERLYTKHSELGPDERPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLANLAILREHPEIREKLIGLYSVEREYEKDDDVDTQLYDGFFSPSDKAAMDIIRQTEPNNLAALDISFADE
RIEPLLFRYKARHYPWTLDESEQQKWANHCREFYESRLEEYMLNLENLAHEHENDEKKMAILKAVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=644015 LZI70_RS13430 WP_255230614.1 2957411..2958835(-) (sbcB) [Vibrio pelagius strain WXL662]
ATGAGCTCAGATAATCAGCCAACCTACTTCTTCTTCGATTACGAAACTTGGGGAACGAGCCCAGCCAAAGATCGACCAAG
TCAATTTGCGGGTGTTCGCACCGACCAAGATTTCAACATCATTGGAGAGCCACTGGTTATCTATTGCCAACCACCCGCTG
ATTATCTACCAGCACCTGAAGCTGCATTGATTACGCGAATCACCCCACAGAAAGCAATGTCACAAGGCCTACCAGAGCCT
GAGTTCATCGCTAAAATTCATGCAGAGTTATCTAAGCCAAACACAACCAGTCTTGGATATAACAGTATTCGATTCGACGA
TGAAGTGACTCGTTATACCTGTTACCGCAACTTTATCGATCCATATGCATGGAGCTGGCAAAACGGTAACTCTCGTTGGG
ATCTATTAGATGTGATGCGCGCCGTACATGCGTTGCGTCCAGACGGCATCGTTTGGCCGGAGAATGAAGAAGGGTTCCCA
AGCTTTAAACTAGAGCACTTGTCTGTTGCTAACGGTATTGAGCACGAGAATGCGCATGACGCGATGGCTGACGTTATCGC
AACCATTGAGCTGGCAAAGAAAATTAAAGCCGCTCAACCGAAAATGTTCGACTACCTATACAACATGCGCCACAAGCGTA
AACTGAATGAGCTGATCGACATTATAAACATGACACCACTGATGCACGTGTCTGGCATGTTGGGGAAAGAGTGCAACTAC
ACCAGTTGGATTGTTCCAATGGCTTGGCACCCGACCAATCAAAACGCGGTTATCGTTGTTGATCTAGCGAAAGACCCAAC
ACCACTGCTTGAATTAGACGCAGATGAATTGCGTGAACGACTCTACACCAAACACAGCGAATTGGGCCCAGATGAGCGAC
CTGTACCGATTAAACTCGTGCAACTGAATAAGTGCCCTATTCTTGCTCCTGCGAAAACACTAACAGCCGAAAATGCTGAA
ACCATTGGCATTGATCGTCAGCAGTGTCTCGCAAACTTAGCGATTCTTCGTGAACACCCAGAGATTCGCGAAAAACTGAT
TGGTCTTTACTCTGTTGAGCGCGAATACGAGAAAGACGACGATGTTGATACTCAGCTTTACGATGGTTTCTTCTCTCCAT
CAGATAAAGCCGCAATGGATATTATTCGCCAAACCGAACCAAACAACCTTGCAGCACTCGACATCAGCTTTGCCGACGAA
CGTATAGAACCCCTTCTGTTCCGTTACAAAGCGCGTCACTACCCTTGGACATTAGACGAGTCAGAGCAGCAAAAATGGGC
TAATCACTGTCGTGAGTTTTACGAAAGTCGACTTGAAGAGTACATGCTCAACCTTGAGAATCTTGCTCATGAGCATGAAA
ACGACGAAAAGAAGATGGCGATACTCAAAGCGGTATATCAATACGTTGAGAAATTAGCGAGTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

77.848

100

0.778