Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   LZI70_RS11950 Genome accession   NZ_CP090614
Coordinates   2616760..2618160 (+) Length   466 a.a.
NCBI ID   WP_255230334.1    Uniprot ID   -
Organism   Vibrio pelagius strain WXL662     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2611760..2623160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZI70_RS11930 (LZI70_11915) rsxB 2612159..2612743 (-) 585 WP_255230331.1 electron transport complex subunit RsxB -
  LZI70_RS11935 (LZI70_11920) rsxA 2612746..2613324 (-) 579 WP_255230332.1 electron transport complex subunit RsxA -
  LZI70_RS11945 (LZI70_11930) uvrB 2614442..2616472 (+) 2031 WP_255230333.1 excinuclease ABC subunit UvrB -
  LZI70_RS11950 (LZI70_11935) luxO 2616760..2618160 (+) 1401 WP_255230334.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  LZI70_RS11955 (LZI70_11940) luxU 2618180..2618515 (+) 336 WP_255230335.1 quorum-sensing phosphorelay protein LuxU -
  LZI70_RS11960 (LZI70_11945) - 2618569..2619456 (-) 888 WP_255230336.1 YvcK family protein -
  LZI70_RS11965 (LZI70_11950) moaA 2619794..2620783 (+) 990 WP_255230337.1 GTP 3',8-cyclase MoaA -
  LZI70_RS11970 (LZI70_11955) moaB 2620873..2621385 (+) 513 WP_150868996.1 molybdenum cofactor biosynthesis protein B -
  LZI70_RS11975 (LZI70_11960) moaC 2621397..2621876 (+) 480 WP_255230339.1 cyclic pyranopterin monophosphate synthase MoaC -
  LZI70_RS11980 (LZI70_11965) moaD 2621873..2622118 (+) 246 WP_255230340.1 molybdopterin synthase sulfur carrier subunit -
  LZI70_RS11985 (LZI70_11970) moaE 2622121..2622576 (+) 456 WP_255230341.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52029.54 Da        Isoelectric Point: 5.9775

>NTDB_id=644012 LZI70_RS11950 WP_255230334.1 2616760..2618160(+) (luxO) [Vibrio pelagius strain WXL662]
MQSKTFDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGKEAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQNF
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSAEHPGSQNYQGFIGSSLTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFSQEVIDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPLENSL
RLKEKQSEDISVKDIFPLWLTEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQAWNAKQSSSE

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=644012 LZI70_RS11950 WP_255230334.1 2616760..2618160(+) (luxO) [Vibrio pelagius strain WXL662]
ATGCAATCAAAAACATTTGATAATAAATCGAAATATTTGTTAATGGTAGAGGATACGGCGTCCGTTGCGGCGTTGTATCG
ATCTTACCTGACCCCTTTAGAGATAGATATCAATATTGTGGGTACAGGCAAAGAGGCAATAGAGAGCCTTAACCATAGAA
TCCCGGACCTCATTCTCCTTGATCTTCGTCTTCCAGATATGACGGGGATGGATGTTCTATTTGCTGTAAAGCAAAACTTC
CCTGAAGTTCCGGTCATTTTCATGACAGCCCACGGCTCGATTGATACCGCCGTTGAAGCGATGCGTCACGGATCTCAAGA
CTTTTTGATCAAGCCATGTGAGGCAGATCGTCTACGAATTACAGTCAACAATGCCATTCGTAAAGCAACTAAGCTGAAGA
ATAGCGCTGAACACCCGGGCAGCCAGAACTATCAAGGTTTCATCGGCAGTAGCCTAACCATGCAGCAGGTGTATCGCACG
ATCGACTCCGCGGCTTCGAGTAAGGCGAGCATTTTTATCACCGGTGAGAGTGGTACAGGTAAAGAAGTGTGTGCTGAAGC
TATTCATGCTGCAAGTAAACGTGGGGACAAACCGTTTATTGCCATTAACTGTGCTGCTATTCCAAAAGATTTGATTGAGA
GTGAGTTGTTTGGTCACGTTAAAGGTGCGTTCACGGGCGCAGCTACCGATCGACAAGGTGCAGCCGAGCTAGCCGATGGA
GGAACTTTGTTCCTTGATGAGTTGTGTGAAATGGATCTTGAGCTACAAACCAAATTGCTTCGTTTTATCCAAACAGGTAC
TTTCCAAAAAGTAGGCTCTTCAAAAATGAAGAGTGTGGATGTGCGTTTTGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AGGTTCAAGAAGGTCGTTTCCGCGAAGATTTGTATTATCGCTTGTACGTTATCCCACTGCATCTCCCACCCTTGCGCGAA
CGCGGTGAAGACGTTATTGAGATTGCTTATTCGTTGTTGGGCTATATGTCGGTGGAAGAGGGCAAAGCGTTTGTTCGTTT
CTCTCAGGAAGTGATCGATCGATTCAACCAGTACGAGTGGCCCGGGAATGTACGTCAATTGCAAAACGTTTTACGAAATG
TCGTAGTACTAAATAACGGTAAAGAGATCACCTTGAATATGTTGCCACCCCCTCTTAACCAACCGTTAGAAAATAGCCTG
CGATTGAAAGAGAAACAGAGCGAAGACATCTCGGTTAAGGATATTTTCCCACTGTGGTTGACCGAAAAAACAGCGATAGA
ACAGGCAATTAAAGCATGCGATGGTAATATCCCAAGGGCAGCAGGCTTCTTAGATGTTAGCCCATCGACCATTTATCGAA
AACTGCAAGCATGGAACGCAAAACAGTCGTCCTCAGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

85.268

96.137

0.82