Detailed information NTG0644011

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: LZI70_RS09840
• Genome accession: NZ_CP090614
• Coordinates: 2175972..2179361 (-)
• Length: 1129 a.a.
• NCBI ID: WP_255229970.1
• Uniprot ID: -
• Organism: Vibrio pelagius strain WXL662
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2170972..2184361

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZI70_RS09825 (LZI70_09810)	-	2171007..2171993 (-)	987	WP_255229967.1	ABC transporter permease	-
LZI70_RS09830 (LZI70_09815)	-	2172164..2173846 (-)	1683	WP_255229968.1	ABC transporter substrate-binding protein	-
LZI70_RS09835 (LZI70_09820)	-	2174636..2175829 (-)	1194	WP_255229969.1	ISL3 family transposase	-
LZI70_RS09840 (LZI70_09825)	chiS	2175972..2179361 (-)	3390	WP_255229970.1	response regulator	Regulator
LZI70_RS09845 (LZI70_09830)	rsmC	2179579..2180601 (-)	1023	WP_255229971.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
LZI70_RS09850 (LZI70_09835)	-	2180692..2181777 (-)	1086	WP_255229972.1	AI-2E family transporter	-
LZI70_RS09855 (LZI70_09840)	hemL	2182088..2183377 (-)	1290	WP_255229973.1	glutamate-1-semialdehyde 2,1-aminomutase	-
LZI70_RS09860 (LZI70_09845)	erpA	2183675..2184016 (+)	342	WP_032551754.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127119.86 Da
• Isoelectric Point: 5.4194

>NTDB_id=644011 LZI70_RS09840 WP_255229970.1 2175972..2179361(-) (chiS) [Vibrio pelagius strain WXL662]
MFRFYRKQKFKRLQSTLMLAFLVLSLTPVTLIAVFFLQSHSQDLQEQSTSYLVSVRDTKQQQIIDYLEAQESQVIGFVRS
ELAIASGGRFYGLINAFQRLGLDIEEARSNAQQRYIQGSGNEVKTSILPESSSYVGSERYRLLHKRYHNAYLELIKRADF
DDILLVDINGNVAYSVFKHDNYGTNLLTGKYKDSNLGLTFQKLAKDVTEKRKINEDYTPVIVSDFLDENGKQSAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKSSNMQTLLVGSDHLPRSLAHSQQAIDLSLDVIDKALAGETAVGTFNNSLNQA
IIAAYAPIKLDYANWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVFVASHYLSNFITSPLLKLTWAAEKVSAGDLDE
AMINTERKDEIGRLAVSFERMQRSIREKMRLIKSQNEELEDNLKTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPIPANQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGSKPIRI
INQVPTDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEHLEHIFEPLIQAGQEAS
SYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLATPEELEHYSESSSYSHFQAPEVLESSQQDNSEIHEDP
DGPLLVIADDEPVNLRVLDSFLKLEGYRVRTACDGPDTIELIEKEKPELLLLDIMMPGMSGYQVCETLRKQYDHAQLPII
MLTALNQPEDRVRGFEVGANDYLSKPFNKQELAARITAHLSASKAEQRRIENDQLQQELKHRAMVEANLLETQGRLLEQL
ESAPEAIICIRDDQRIRFANDAAAKLFKRSQEQLKRSMADEIIAPKYLRIDQAHYCGEIDVYISDTRQRVSSDILKLPEG
SGLDTMYIFNVGGAVNSNRINDLETAIEALSSYAFEGDKDKLQQLKELGGEFTRLADKAAGEGKNKQELMREVLVEAMTN
ALTYWESVTGESKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSLEFILDHCKEQTPERTHIEMLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=644011 LZI70_RS09840 WP_255229970.1 2175972..2179361(-) (chiS) [Vibrio pelagius strain WXL662]
ATGTTTAGATTCTATCGAAAGCAGAAGTTTAAGCGCCTTCAAAGTACGCTCATGCTAGCGTTTCTCGTGTTAAGTCTGAC
TCCTGTTACTCTTATCGCAGTCTTTTTCCTCCAATCTCATAGTCAAGATCTGCAAGAGCAAAGTACCTCCTATTTAGTCT
CAGTTCGTGATACCAAACAGCAACAGATCATTGATTACCTAGAAGCTCAAGAGTCTCAAGTGATTGGTTTTGTCCGTTCA
GAGTTGGCTATCGCCAGTGGTGGGCGTTTCTATGGCCTTATTAATGCTTTTCAACGCCTCGGCTTAGACATCGAAGAAGC
ACGTAGCAATGCGCAACAACGCTATATTCAAGGTTCGGGTAATGAGGTAAAAACGTCAATTTTACCGGAGTCGAGTAGCT
ACGTTGGCAGTGAGCGTTATCGCCTACTTCATAAACGCTACCACAATGCCTATCTAGAGCTGATCAAACGTGCCGATTTT
GACGATATTCTTCTAGTCGATATCAACGGCAATGTGGCCTATTCGGTATTTAAGCATGATAACTACGGTACTAATCTACT
CACTGGCAAATACAAAGATTCAAACCTTGGGCTCACTTTCCAAAAGTTGGCTAAAGACGTAACAGAAAAGCGCAAAATTA
ACGAAGATTACACTCCAGTGATCGTTTCTGATTTCTTAGACGAAAACGGTAAACAGAGCGCTTGGCTAGGTGCCCCTATT
GTTCAGCAAGGTTACTTACACAGCTACGCAATGTTCCGACTGCCAATCAACGGCATCACTAAGCTGATTGCGGATCTCAA
CAAGAGCTCAAACATGCAGACTCTTCTTGTGGGTAGTGACCACCTCCCGAGAAGCCTGGCGCATTCTCAACAAGCCATCG
ACCTTAGCTTGGATGTGATAGATAAAGCGTTAGCAGGTGAGACGGCAGTTGGTACTTTCAACAACAGTTTGAATCAGGCC
ATTATTGCAGCATACGCGCCAATCAAGTTGGATTACGCAAACTGGGCGCTGGTGGTTGAACTGCCAGAAAAAGAAGCCTT
TGCTCGAATCCATCAGCTTGAAAAAATCTTCGTCATCGTGATGTTAACCGCTATCATACTGGTGTTTGTTGCATCTCATT
ACCTGTCTAATTTCATTACTTCTCCCCTGCTTAAGCTAACTTGGGCTGCCGAAAAAGTCTCAGCAGGCGATCTTGATGAA
GCGATGATCAACACCGAGCGAAAAGATGAAATAGGACGCCTAGCGGTAAGCTTTGAGCGTATGCAGCGCTCCATTCGTGA
AAAGATGCGCTTAATCAAATCACAAAATGAAGAGCTTGAAGATAACCTCAAGACCATCCAAAAGCAGAACGAGGAGTTAC
AACTCGCCAACAAGCTCAAAGATGAATTCCTCGCTACGACCTCGCATGAACTGCGCACTCCTTTGCACGGCATGGTAGGT
ATTGCGGAGGCATTAATCTCTGGCGCGAATGGCCCTATCCCAGCAAACCAGAAATACCAACTGGATATCATCATCAACAG
TGGTCAGCGCCTCGCTACACTGGTCGATGACCTTCTTGATTATCACAAAATGCGTTATGGCAGTTTAGACATTAAAAAGT
CTGCTGTTGACCTCTCTGCTGCGACCAGCTTGGTACTTGAGCTATCACATCATCTACTTGGCAGTAAACCCATTCGTATC
ATCAACCAAGTTCCAACGGACTTAGGTCTTGTATCATCTGACCCGCAACGCCTAGAGCAGGTGATGTATAACTTGGTTGG
TAATGCCATTAAGTACACCTCTGAGGGCAAAATCGTCATCTCTGCGAGTGTCATTGACGACAATATTCGCGTTCAGGTAG
TCGATACTGGCCAAGGTATCCCAGCAGAGCATTTAGAACATATTTTTGAACCGTTAATTCAAGCAGGGCAAGAAGCAAGT
TCATATCGACAAGGCGCGGGGCTTGGGCTATCGATCAGCCGTCAATTGATTGAATTAATGGGTGGTTCACTCTATGTCAG
TAGCCAGCCGATGGTGGGAACAACATTCAGTTTCACCTTACCACTCGCCACACCGGAAGAGCTTGAACACTACAGTGAAT
CTAGCAGTTACTCACACTTCCAAGCTCCAGAAGTACTAGAGAGTAGCCAACAAGATAACAGTGAGATCCACGAAGACCCA
GACGGCCCGCTATTAGTGATTGCCGATGATGAACCGGTTAACCTGCGCGTACTTGATAGCTTCTTAAAGCTAGAAGGCTA
CCGTGTTCGTACCGCTTGCGATGGTCCGGATACCATTGAGTTAATCGAAAAAGAGAAACCAGAGCTGTTACTGCTCGACA
TCATGATGCCGGGTATGAGCGGCTACCAAGTATGTGAAACACTAAGAAAGCAGTATGACCACGCACAATTGCCAATCATT
ATGCTGACCGCATTGAACCAACCCGAAGACCGCGTACGAGGCTTTGAGGTTGGCGCTAATGATTACCTATCAAAACCATT
TAATAAACAGGAACTAGCGGCGAGAATCACGGCGCATTTATCAGCAAGTAAAGCGGAGCAAAGACGCATCGAGAACGATC
AACTGCAACAAGAGTTGAAACATCGCGCAATGGTAGAAGCCAACCTGCTTGAAACCCAAGGTCGACTGCTTGAGCAATTA
GAATCAGCGCCTGAAGCGATCATATGCATTCGTGATGACCAACGTATTCGCTTTGCGAATGACGCTGCCGCTAAACTCTT
TAAACGCAGCCAAGAGCAACTCAAACGCTCAATGGCTGATGAGATCATCGCCCCTAAGTACTTACGCATAGACCAAGCGC
ACTACTGTGGCGAGATTGATGTCTACATCAGTGATACTCGCCAACGAGTGTCAAGTGACATTCTCAAGCTCCCAGAAGGC
TCAGGGTTAGATACCATGTATATTTTCAATGTCGGTGGTGCAGTAAACTCAAATCGTATCAATGACCTAGAAACAGCCAT
AGAAGCGCTATCAAGCTATGCGTTTGAAGGCGACAAGGACAAACTGCAGCAACTAAAAGAGCTGGGGGGCGAGTTTACTC
GCCTTGCTGACAAGGCTGCCGGTGAAGGCAAGAATAAACAAGAGTTAATGCGAGAGGTGCTTGTTGAAGCCATGACCAAC
GCCCTTACCTATTGGGAGTCGGTTACCGGGGAAAGTAAATTTGCCTTCGCTGAAAAGAGTGGCTTATGGCGTGTCTATCT
CGACAGAAGTACATTGCAAACCCGAACACTAGATAAGTACTTGCGCGTAGAAACTCTGCCTAAGACACCTCGCTGGCGCA
CCGTATTGAGCTCTCTTGAATTTATTCTGGATCACTGTAAAGAACAAACGCCGGAAAGAACTCATATTGAGATGCTCCGA
GATAAGCTACAAAAGCTCCTCACAAGCTAG

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• HAMP domain (HAMP) (375-427)

• Response regulator receiver domain (Response_reg) (726-836)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• PAS domain (PAS_8) (880-916)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.616	100	0.766