Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LZI70_RS09565 Genome accession   NZ_CP090614
Coordinates   2107816..2108334 (+) Length   172 a.a.
NCBI ID   WP_255229923.1    Uniprot ID   -
Organism   Vibrio pelagius strain WXL662     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2102816..2113334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZI70_RS09555 (LZI70_09540) gshA 2105572..2107140 (+) 1569 WP_255229922.1 glutamate--cysteine ligase -
  LZI70_RS09560 (LZI70_09545) - 2107151..2107792 (+) 642 WP_420833780.1 hypothetical protein -
  LZI70_RS09565 (LZI70_09550) luxS 2107816..2108334 (+) 519 WP_255229923.1 S-ribosylhomocysteine lyase Regulator
  LZI70_RS09570 (LZI70_09555) - 2108652..2109941 (-) 1290 WP_255229924.1 HlyC/CorC family transporter -
  LZI70_RS09575 (LZI70_09560) - 2110068..2110862 (-) 795 WP_255229925.1 cytochrome C assembly family protein -
  LZI70_RS09580 (LZI70_09565) ffh 2111063..2112454 (+) 1392 WP_255229926.1 signal recognition particle protein -
  LZI70_RS09585 (LZI70_09570) rpsP 2112717..2112965 (+) 249 WP_004410028.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18973.81 Da        Isoelectric Point: 4.7447

>NTDB_id=644005 LZI70_RS09565 WP_255229923.1 2107816..2108334(+) (luxS) [Vibrio pelagius strain WXL662]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGEQVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLAAMADVLKVESQNKIPELNEYQCGTAAMHSLEEAKEIAKAIIEAGISVNKNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=644005 LZI70_RS09565 WP_255229923.1 2107816..2108334(+) (luxS) [Vibrio pelagius strain WXL662]
ATGCCTTTATTAGATAGTTTTACTGTGGATCACACACGCATGAATGCACCTGCAGTACGCGTAGCAAAAACCATGCAGAC
GCCTAAAGGAGATACGATCACAGTATTCGATTTACGTTTCACTGCACCCAATAAAGATATCCTATCCGAGAAAGGAATTC
ATACCCTTGAGCACCTTTACGCTGGCTTTATGCGTGCGCATCTAAATGGCGAGCAAGTTGAAATCATCGATATTTCACCA
ATGGGCTGTCGTACAGGTTTCTACATGAGCCTGATCGGTACACCTTCAGAGCAGCAAGTGGCTGACGCTTGGTTGGCAGC
AATGGCTGACGTGCTGAAAGTTGAGAGTCAAAACAAGATTCCTGAGCTGAATGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTAGAAGAAGCAAAAGAGATTGCTAAGGCGATTATTGAGGCAGGTATCTCAGTGAATAAGAATGATGAACTGGCG
CTGCCAGAATCTATGCTTAAAGAATTGAAAGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

90.643

99.419

0.901