Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LZI70_RS08255 Genome accession   NZ_CP090614
Coordinates   1876074..1877099 (+) Length   341 a.a.
NCBI ID   WP_255229753.1    Uniprot ID   -
Organism   Vibrio pelagius strain WXL662     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1871074..1882099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZI70_RS08240 (LZI70_08230) - 1871442..1872170 (-) 729 WP_255229748.1 glutathione peroxidase -
  LZI70_RS08245 (LZI70_08235) oxyR 1872375..1873262 (+) 888 WP_255229749.1 DNA-binding transcriptional regulator OxyR -
  LZI70_RS08250 (LZI70_08240) - 1873368..1875926 (-) 2559 WP_255229752.1 penicillin-binding protein 1A -
  LZI70_RS08255 (LZI70_08245) pilM 1876074..1877099 (+) 1026 WP_255229753.1 type IV pilus assembly protein PilM Machinery gene
  LZI70_RS08260 (LZI70_08250) pilN 1877083..1877682 (+) 600 WP_255229755.1 PilN domain-containing protein Machinery gene
  LZI70_RS08265 (LZI70_08255) pilO 1877675..1878268 (+) 594 WP_255229757.1 type 4a pilus biogenesis protein PilO Machinery gene
  LZI70_RS08270 (LZI70_08260) pilP 1878255..1878773 (+) 519 WP_255229759.1 pilus assembly protein PilP Machinery gene
  LZI70_RS08275 (LZI70_08265) - 1878914..1880530 (+) 1617 Protein_1530 type IV pilus secretin PilQ -
  LZI70_RS08280 (LZI70_08270) aroK 1880705..1881223 (+) 519 WP_032550005.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 38130.54 Da        Isoelectric Point: 7.2208

>NTDB_id=643994 LZI70_RS08255 WP_255229753.1 1876074..1877099(+) (pilM) [Vibrio pelagius strain WXL662]
MGSSLVTGIDINNHSIKAVVLKPVGELYALVGYKELPITDDIFTDNHTLEYQKTVKKLKELRRGLPFGCRHAAISVPDNT
VISKVLQIESDLEDREKEFSIYQTFAHQSPFPIEELSLDFIKLDDERFGKGLTTSYQVYATRKEVVESRSLALSKAGFQP
IVVDTQAHGLLNIWQLATRLYPQKQNWMLVDIGVTQTSLGLISQSGVPFFKDIAFGTQTVNQSDSRSELTISFGSVEQNQ
TFTISLIEKLKRQLQLYASINSMQSLKGIWLTGEGAETPLLAEHLERHFQIPCESLNPLALFENRASNKRYKSMDRHAFG
IAAGIAVSGVKWQGVKHVASN

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=643994 LZI70_RS08255 WP_255229753.1 1876074..1877099(+) (pilM) [Vibrio pelagius strain WXL662]
ATGGGTTCGTCATTAGTTACAGGTATAGATATAAACAATCACAGCATAAAAGCGGTGGTTTTAAAGCCCGTTGGAGAGTT
ATATGCCTTAGTGGGGTACAAAGAACTGCCTATTACGGACGACATTTTCACAGATAACCACACCTTGGAGTATCAGAAAA
CTGTAAAGAAACTCAAAGAACTTAGGAGAGGCTTACCATTTGGCTGTCGTCATGCCGCTATCTCTGTCCCAGATAATACC
GTGATTAGCAAAGTCTTGCAGATAGAAAGTGACCTAGAAGACCGAGAAAAAGAGTTTTCTATCTACCAAACTTTTGCTCA
CCAATCGCCCTTTCCTATTGAAGAGCTGAGCTTGGATTTCATAAAACTGGATGATGAGCGATTTGGTAAAGGCTTAACCA
CTAGCTATCAAGTCTACGCGACGCGTAAAGAAGTAGTAGAAAGTCGCTCTTTAGCCTTATCTAAGGCAGGGTTTCAACCC
ATCGTTGTCGATACCCAAGCTCATGGTTTGCTTAACATTTGGCAGTTGGCTACTCGACTTTATCCTCAGAAGCAGAACTG
GATGTTGGTCGATATAGGGGTAACGCAAACATCATTAGGGCTGATTTCTCAAAGCGGAGTGCCTTTTTTTAAAGATATCG
CCTTCGGTACGCAAACTGTCAATCAAAGTGACTCTCGCAGTGAGTTGACGATTAGCTTTGGCTCAGTTGAACAGAATCAA
ACTTTTACGATCAGTTTAATTGAGAAACTCAAACGGCAGTTGCAGCTTTATGCCTCAATCAATTCAATGCAGTCACTGAA
AGGCATTTGGTTGACAGGTGAGGGTGCGGAAACTCCGTTATTGGCTGAGCATTTGGAGCGACATTTTCAGATCCCTTGTG
AGTCACTCAACCCTTTGGCGCTATTTGAAAATAGGGCCTCTAATAAACGCTATAAGAGCATGGACCGTCACGCTTTTGGC
ATCGCGGCTGGTATTGCAGTCAGTGGGGTGAAGTGGCAAGGAGTGAAACATGTTGCATCAAATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

51.917

99.413

0.516
  pilM Vibrio campbellii strain DS40M4

47.214

100

0.472