Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   LZI70_RS00555 Genome accession   NZ_CP090614
Coordinates   142622..144109 (+) Length   495 a.a.
NCBI ID   WP_255230776.1    Uniprot ID   -
Organism   Vibrio pelagius strain WXL662     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 137622..149109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZI70_RS00535 (LZI70_00535) - 138684..139673 (+) 990 WP_255230772.1 ABC transporter substrate-binding protein -
  LZI70_RS00540 (LZI70_00540) - 139795..140694 (+) 900 WP_255230773.1 ABC transporter permease -
  LZI70_RS00545 (LZI70_00545) - 140687..141913 (+) 1227 WP_255230774.1 quaternary amine ABC transporter ATP-binding protein -
  LZI70_RS00550 (LZI70_00550) - 142135..142524 (+) 390 WP_255230775.1 Hpt domain-containing protein -
  LZI70_RS00555 (LZI70_00555) luxO 142622..144109 (+) 1488 WP_255230776.1 sigma-54-dependent transcriptional regulator Regulator
  LZI70_RS00560 (LZI70_00560) - 144090..145172 (+) 1083 WP_255230777.1 glycosyltransferase family 4 protein -
  LZI70_RS00565 (LZI70_00565) - 145430..146602 (+) 1173 WP_255230778.1 glycosyltransferase -
  LZI70_RS00570 (LZI70_00570) - 146626..147855 (+) 1230 WP_255230779.1 glycosyltransferase family 4 protein -
  LZI70_RS20620 - 147887..148663 (+) 777 Protein_114 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55224.36 Da        Isoelectric Point: 6.0505

>NTDB_id=643977 LZI70_RS00555 WP_255230776.1 142622..144109(+) (luxO) [Vibrio pelagius strain WXL662]
MRPKVLLVEDSTSLAVLYKQYVKDEPYDIFHVETGAEAKTFIERHTPQLVILDLKLPDMSGEEVLDWITEKEVPTAVIIA
TAHGSVDIAVSLIQRGAEDFLEKPIQAERLKTSVQLHLKRAKLENLVENIKSKFDRESFQGFIGSCLPMQAVYKTIDSVA
PTTASVFINGESGTGKEVCAEAIHKESQRRDKPFVAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAAMQAHGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGATREVKVDVRIICATNRDPLLEVEEGRFREDLYYRVHVVPIEMPPLRERGSDI
VTLCKHFLKIYAKQDGKKFKSIDKEAQVLLKNYPWPGNVRQLQNIIRNIVVLNNETNVTKEMIPAPINGAGSRSKVVTPT
KRAEPVQEAVVETVSKPAPLTPDQIEATPESNGPALTNGDGSIRPMWKIEREAIQNAINHCDGNVLNAAVLLELSPSTVY
RKKQAWEAEDEYNQA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=643977 LZI70_RS00555 WP_255230776.1 142622..144109(+) (luxO) [Vibrio pelagius strain WXL662]
ATGCGCCCTAAAGTATTGTTAGTTGAAGACTCCACTTCATTAGCTGTTTTATACAAACAGTATGTAAAAGATGAACCCTA
CGACATTTTTCACGTCGAAACGGGAGCAGAAGCCAAAACCTTCATTGAGCGCCACACGCCGCAACTGGTTATCCTCGACC
TGAAGTTACCTGACATGTCGGGCGAAGAAGTATTAGATTGGATAACAGAAAAGGAAGTTCCGACGGCTGTAATTATTGCT
ACCGCTCATGGCTCAGTCGACATTGCAGTTAGCCTTATTCAGCGTGGTGCAGAAGACTTTCTCGAAAAACCGATTCAAGC
TGAACGCCTAAAAACCTCAGTTCAGTTGCACCTTAAACGCGCCAAGCTAGAAAATCTAGTTGAGAACATCAAAAGTAAGT
TCGACCGCGAATCCTTCCAAGGCTTCATTGGCTCATGTCTACCGATGCAAGCCGTATACAAAACCATCGACTCGGTAGCA
CCAACCACTGCCAGTGTGTTCATTAATGGTGAGAGCGGTACGGGTAAAGAGGTGTGTGCTGAAGCCATCCATAAGGAGAG
CCAGCGCCGCGACAAGCCGTTCGTTGCGATCAACTGTGGTGCCATTCCTCGTGATTTGATGGAAAGTGAAATTTTCGGCC
ACGTTAAAGGCGCATTTACGGGTGCAACGACGGATAGAAAAGGCGCTGCGATGCAAGCGCACGGCGGCACTCTATTTCTC
GACGAGCTCTGTGAGATGGAGCTCGAGATGCAGAAGAAATTGCTGCGATTCTTACAAACAGGCACATTTACCCCACTGGG
GGCAACTCGTGAAGTTAAAGTAGATGTGCGAATCATCTGTGCAACGAACCGAGACCCGCTGTTAGAAGTTGAAGAAGGTC
GCTTTAGAGAAGATCTCTACTACCGTGTTCACGTTGTGCCCATTGAGATGCCACCTTTGCGAGAGCGTGGTAGTGACATT
GTCACACTATGTAAGCACTTTCTGAAAATCTACGCTAAACAAGACGGCAAGAAATTCAAATCGATAGATAAAGAAGCTCA
GGTTTTATTAAAGAACTACCCTTGGCCAGGTAATGTTCGCCAACTTCAGAACATTATTCGAAACATTGTGGTCCTTAATA
ACGAAACCAATGTGACCAAAGAGATGATCCCCGCTCCGATTAATGGTGCGGGTAGCCGGAGCAAAGTCGTAACGCCTACT
AAGCGCGCCGAACCTGTTCAAGAAGCAGTAGTAGAAACAGTCTCCAAGCCTGCCCCATTGACTCCAGATCAAATTGAGGC
TACACCTGAGAGCAACGGCCCCGCTCTTACCAATGGTGATGGCAGTATTCGCCCAATGTGGAAGATTGAGCGAGAAGCGA
TTCAAAATGCGATCAACCACTGTGATGGTAATGTGTTGAATGCCGCAGTGCTGTTAGAGCTTAGCCCTTCTACCGTGTAT
CGTAAGAAGCAGGCATGGGAAGCTGAAGATGAGTACAACCAAGCCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(446-482)

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.896

97.172

0.485