Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LZ568_RS15865 Genome accession   NZ_CP090608
Coordinates   3309098..3310603 (+) Length   501 a.a.
NCBI ID   WP_042977154.1    Uniprot ID   -
Organism   Burkholderia cepacia strain CMCC(B)23005     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3304098..3315603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ568_RS15840 (LZ568_15840) kdsD 3305330..3306313 (+) 984 WP_027789106.1 arabinose 5-phosphate isomerase KdsD -
  LZ568_RS15845 (LZ568_15845) - 3306313..3306849 (+) 537 WP_021162596.1 HAD family hydrolase -
  LZ568_RS15850 (LZ568_15850) lptC 3306853..3307467 (+) 615 WP_059695085.1 LPS export ABC transporter periplasmic protein LptC -
  LZ568_RS15855 (LZ568_15855) lptA 3307488..3308153 (+) 666 WP_021162598.1 lipopolysaccharide transport periplasmic protein LptA -
  LZ568_RS15860 (LZ568_15860) lptB 3308150..3308926 (+) 777 WP_021162599.1 LPS export ABC transporter ATP-binding protein -
  LZ568_RS15865 (LZ568_15865) rpoN/rpoN1 3309098..3310603 (+) 1506 WP_042977154.1 RNA polymerase factor sigma-54 Machinery gene
  LZ568_RS15870 (LZ568_15870) hpf 3310762..3311121 (+) 360 WP_006477786.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LZ568_RS15875 (LZ568_15875) - 3311290..3311829 (+) 540 WP_034195946.1 PTS sugar transporter subunit IIA -
  LZ568_RS15880 (LZ568_15880) hprK 3311961..3312929 (+) 969 WP_011353227.1 HPr(Ser) kinase/phosphatase -
  LZ568_RS15885 (LZ568_15885) rapZ 3313005..3313913 (+) 909 WP_021162602.1 RNase adapter RapZ -
  LZ568_RS15890 (LZ568_15890) - 3313941..3314576 (+) 636 WP_027789102.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54827.96 Da        Isoelectric Point: 4.8767

>NTDB_id=643955 LZ568_RS15865 WP_042977154.1 3309098..3310603(+) (rpoN/rpoN1) [Burkholderia cepacia strain CMCC(B)23005]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDDEWIASPLRVAADGSLIAQTPPAQNTEPAA
TNSSSSSSERAERDEPAGADEYDGYASGDGNDGPQWNLDEFGRASGASDDDDLPPLQVQEAATSLRDHLSAQLRVTQASP
RDRALVMFLIESLDDDGYLTATLDEVLADLPPELEIDCDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKHLKASDDALRDAHTLIRSLEPFPGAAYGKAEADYVVPDIIVKKAGQGWLAELNPEVVP
RLRINNLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=643955 LZ568_RS15865 WP_042977154.1 3309098..3310603(+) (rpoN/rpoN1) [Burkholderia cepacia strain CMCC(B)23005]
ATGAAAGCCAGCCTTCAACTCCGCCTGTCGCAACATCTGGCGCTGACGCCCCAGCTACAGCAGTCGATCCGGCTCCTGCA
GTTGTCGACGCTCGAATTGCAGCAGGAAGTCGCGATGGCCGTCGCGCAGAACCCGCTGCTCGAGAACGACGACGAATGGA
TAGCGAGCCCGCTGCGTGTCGCAGCGGACGGATCGTTGATCGCGCAGACGCCTCCCGCCCAGAACACCGAGCCCGCTGCG
ACAAACAGCAGCAGTTCGTCGAGCGAGCGCGCCGAGCGCGACGAACCGGCGGGCGCGGACGAATACGACGGTTACGCGTC
CGGCGACGGCAACGACGGCCCGCAGTGGAATCTCGACGAATTCGGCCGCGCGAGCGGCGCGTCCGACGACGACGACCTCC
CGCCGCTGCAGGTGCAGGAAGCGGCGACGTCGCTGCGCGACCACCTGTCCGCGCAGTTGCGCGTCACGCAGGCCAGCCCG
CGCGATCGCGCGCTCGTGATGTTCCTGATCGAATCGCTCGACGACGACGGCTACCTGACCGCCACGCTCGACGAAGTGCT
CGCCGACCTGCCGCCCGAGCTGGAAATCGACTGCGACGAACTGAACGCGGCGCTCGCGCTGCTGCACAGCTTCGACCCGG
CCGGGGTCGGCGCCCGCTCGGCATCAGAATGCCTGAAGCTGCAGTTGCTGCGCCTCGATCCGTCCCCGACACGCACGCTC
GCACTCGAGATCGTGTCGCAGCATCTCGAACTGCTCGCCGCCCGCGACTTCACGCGGCTGCGCAAGCACCTGAAGGCGAG
CGACGACGCGCTGCGCGACGCGCACACGCTGATCCGCTCGCTGGAGCCGTTCCCCGGCGCCGCATACGGCAAGGCCGAGG
CCGACTACGTCGTGCCCGACATCATCGTGAAGAAGGCCGGCCAGGGATGGCTCGCGGAGCTCAATCCGGAGGTCGTGCCG
CGCCTGCGGATCAACAACCTCTACGCGAACATCCTGCGCAACAGTCGCGGCGATCCGTCGGCCGGTTCGCTCAAGCAGCA
GCTCCAGGAAGCACGCTGGCTGATCAAGAACATCCAGCAGCGATTCGACACGATCCTGCGTGTCGCGCAGGCGATTGTCG
AGCGTCAAAAGAACTTCTTTGCGCACGGTGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCAGCCGTGTGACAACCGGGAAGTACATGCTGACCCCGTTCGGGACGCTTGAATTTAAGTACTT
CTTCGGATCTCACGTCTCGACCGACACCGGTGGCGCCGCCTCGTCGACCGCCATCCGAGCCCTCATCAAGCAACTGATAG
GAGCTGAAGACCCAAAATCGCCACTTTCGGACAGCCGCATTGCCGAGCTGCTGGCAGAACAGGGGTTCGTGGTCGCGCGC
CGCACGGTTGCGAAGTATCGCGAAGCCCTCAAGATCCCGGCAGTGAATCTGCGCAAGTCTCTTTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.245

100

0.691