Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LZ568_RS11955 Genome accession   NZ_CP090608
Coordinates   2483511..2484887 (-) Length   458 a.a.
NCBI ID   WP_027787075.1    Uniprot ID   A0A4S5DAK7
Organism   Burkholderia cepacia strain CMCC(B)23005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2478511..2489887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ568_RS11935 (LZ568_11935) cls 2478845..2480284 (+) 1440 WP_059694711.1 cardiolipin synthase -
  LZ568_RS11940 (LZ568_11940) - 2480348..2480827 (-) 480 WP_027787077.1 glutathione peroxidase -
  LZ568_RS11945 (LZ568_11945) - 2480964..2482895 (+) 1932 WP_042974800.1 ATP-binding cassette domain-containing protein -
  LZ568_RS11950 (LZ568_11950) - 2483098..2483364 (-) 267 WP_021159088.1 DUF2866 domain-containing protein -
  LZ568_RS11955 (LZ568_11955) radA 2483511..2484887 (-) 1377 WP_027787075.1 DNA repair protein RadA Machinery gene
  LZ568_RS11960 (LZ568_11960) alr 2484899..2485969 (-) 1071 WP_059694714.1 alanine racemase -
  LZ568_RS11965 (LZ568_11965) lplT 2486188..2487495 (+) 1308 WP_027787074.1 lysophospholipid transporter LplT -
  LZ568_RS11970 (LZ568_11970) thiD 2487554..2488363 (+) 810 WP_027787073.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LZ568_RS11975 (LZ568_11975) - 2488382..2489347 (-) 966 WP_059694715.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48923.33 Da        Isoelectric Point: 6.7607

>NTDB_id=643951 LZ568_RS11955 WP_027787075.1 2483511..2484887(-) (radA) [Burkholderia cepacia strain CMCC(B)23005]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVPETPSAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGAPADELKLLAEIQLEKIQ
AAIDTERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEVQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTSALIPKANAPKQPIEGLNVMAVDRLEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=643951 LZ568_RS11955 WP_027787075.1 2483511..2484887(-) (radA) [Burkholderia cepacia strain CMCC(B)23005]
GTGGCCAAACAGAAAACCGTATACGTCTGCAGCGAGTGCGGTGGACAGACCCCGAAGTGGCAAGGGCAATGCCCGTCGTG
CCAGGCCTGGAATACGCTCGTCGAATCGGTTCCTGAAACGCCGTCGGCCCATCGTTTCCAGTCGCTCGCGAAGCGTGCGC
CCGTGCAGCGTCTCGTCGACATCGAAGCAGCCGACGTGCCGCGCTTCTCCACCGGCATCGGCGAATTCGACCGCGTGCTC
GGCGGCGGGCTCGTGCCGGGCGGCGTCGTACTGATCGGCGGCGATCCGGGTATCGGCAAATCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGCGAGGAATCGGCCGCGCAAATCGCGTTGCGCGCGC
AACGGCTTGCGCTGCTCGACGGCGGTGCGCCGGCAGACGAACTGAAGCTGCTCGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACACGGAACGGCCGGACGTGGCCGTGATCGACTCGATCCAGACCGTCTATTCGGAAGCGCTCACGTCGGC
CCCCGGCTCCGTCGCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCGAAGCAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAAGGCAATCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTCCTGTACTTC
GAAGGCGACACGCACTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGTGTGTT
CGCGATGACGGAGCGCGGGCTGCGTGGCGTCGCGAATCCGTCCGCACTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GCTCGTGCGTGCTCGTTACACAGGAGGGCACGCGCCCGCTGCTCGTCGAAGTCCAGGCGCTCGTCGACACCGCGCACGTG
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAACAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGTCATGCGGG
CATCGCGTGCTTCGACCAGGACGTGTTCCTCAATGCGGTGGGCGGCGTGAAGATCACCGAGCCGGCCGCCGACCTCGCGG
TGCTGCTCGCGATCCATTCGTCGATGCGCAACAAGGCGCTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTGGGGCTGGCG
GGCGAGATCCGGCCGTCGCCGCGCGGGCAGGAGCGGCTGCGCGAGGCCGCGAAGCTCGGTTTCACGTCCGCGTTGATCCC
GAAGGCGAACGCGCCGAAGCAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGATCGGCTCGAGCAGGCGATCGACCGCG
TGCGCGATCTCGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4S5DAK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.241

100

0.496
  radA Streptococcus mitis SK321

47.162

100

0.472
  radA Streptococcus pneumoniae Rx1

46.855

100

0.472
  radA Streptococcus pneumoniae D39

46.855

100

0.472
  radA Streptococcus pneumoniae R6

46.855

100

0.472
  radA Streptococcus pneumoniae TIGR4

46.855

100

0.472
  radA Streptococcus mitis NCTC 12261

46.827

99.782

0.467