Detailed information NTG0064393

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: A0K_RS04900
• Genome accession: NZ_AAQW01000001
• Coordinates: 1016112..1016984 (-)
• Length: 290 a.a.
• NCBI ID: WP_009875878.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa PACS2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1011112..1021984

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A0K_RS04855	-	1011973..1012143 (-)	171	WP_003094672.1	DUF3094 family protein	-
A0K_RS04860	-	1012169..1012618 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
A0K_RS04865	-	1012615..1013244 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
A0K_RS04870	-	1013377..1013802 (+)	426	WP_009875877.1	GNAT family N-acetyltransferase	-
A0K_RS04875	-	1013799..1014269 (+)	471	WP_003094664.1	hypothetical protein	-
A0K_RS04880	-	1014266..1014955 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
A0K_RS04885	-	1015061..1015270 (+)	210	WP_003094660.1	hypothetical protein	-
A0K_RS04890	yacG	1015307..1015507 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
A0K_RS04895	coaE	1015504..1016115 (-)	612	WP_003112838.1	dephospho-CoA kinase	-
A0K_RS04900	pilD	1016112..1016984 (-)	873	WP_009875878.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
A0K_RS04905	pilC	1016988..1018208 (-)	1221	WP_016253888.1	type 4a pilus biogenesis protein PilC	Machinery gene
A0K_RS04910	pilB	1018212..1019912 (-)	1701	WP_009875880.1	type IV-A pilus assembly ATPase PilB	Machinery gene
A0K_RS04915	pilA	1020141..1020593 (+)	453	WP_024947914.1	pilin	Machinery gene
A0K_RS04925	nadC	1020781..1021629 (-)	849	WP_003104915.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31811.84 Da
• Isoelectric Point: 7.7068

>NTDB_id=64393 A0K_RS04900 WP_009875878.1 1016112..1016984(-) (pilD) [Pseudomonas aeruginosa PACS2]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=64393 A0K_RS04900 WP_009875878.1 1016112..1016984(-) (pilD) [Pseudomonas aeruginosa PACS2]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATACTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469