Detailed information NTG0064393

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HRR25_RS09035
• Genome accession: NZ_AP021896
• Coordinates: 1877624..1878616 (-)
• Length: 330 a.a.
• NCBI ID: WP_135560956.1
• Uniprot ID: -
• Organism: Escherichia coli strain 2018-02-2CC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1872624..1883616

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HRR25_RS09015 (VEGS05_17830)	otnK	1873399..1874661 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
HRR25_RS09020 (VEGS05_17840)	ygbL	1874658..1875296 (+)	639	WP_001278994.1	aldolase	-
HRR25_RS09025 (VEGS05_17850)	ygbM	1875301..1876077 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
HRR25_RS09030 (VEGS05_17860)	ygbN	1876166..1877530 (+)	1365	WP_000104441.1	GntP family transporter	-
HRR25_RS09035 (VEGS05_17870)	rpoS	1877624..1878616 (-)	993	WP_135560956.1	RNA polymerase sigma factor RpoS	Regulator
HRR25_RS09040 (VEGS05_17880)	nlpD	1878679..1879773 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HRR25_RS09045 (VEGS05_17890)	pcm	1879958..1880584 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HRR25_RS09050 (VEGS05_17900)	surE	1880578..1881339 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HRR25_RS09055 (VEGS05_17910)	truD	1881320..1882369 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
HRR25_RS09060 (VEGS05_17920)	ispF	1882366..1882845 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HRR25_RS09065 (VEGS05_17930)	ispD	1882845..1883555 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37986.87 Da
• Isoelectric Point: 4.5597

>NTDB_id=64393 HRR25_RS09035 WP_135560956.1 1877624..1878616(-) (rpoS) [Escherichia coli strain 2018-02-2CC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEIYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=64393 HRR25_RS09035 WP_135560956.1 1877624..1878616(-) (rpoS) [Escherichia coli strain 2018-02-2CC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAATTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712