Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   L0B74_RS09430 Genome accession   NZ_CP090603
Coordinates   1898530..1900326 (+) Length   598 a.a.
NCBI ID   WP_249905623.1    Uniprot ID   -
Organism   Lactobacillus amylovorus strain S1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1900597..1901820 1898530..1900326 flank 271


Gene organization within MGE regions


Location: 1898530..1901820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0B74_RS09430 pepF 1898530..1900326 (+) 1797 WP_249905623.1 oligoendopeptidase F Regulator
  L0B74_RS09435 - 1900597..1901820 (+) 1224 WP_139962044.1 IS110 family transposase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68215.14 Da        Isoelectric Point: 4.7135

>NTDB_id=643896 L0B74_RS09430 WP_249905623.1 1898530..1900326(+) (pepF) [Lactobacillus amylovorus strain S1]
MAIPTRNEVPENLKWDLTRIFKTDEDWEAAFDKAKDDVEKLGALKGTLTKSGKDLYESLTKILAVKRDVENIYVYATMSS
DVDTSNSHYLGYVSRVQTLANQFEAVTSFISPEILSIPSDKLAQFKKDEPRLKNYEHYLETITNKRPHTLPAEEEKIIAD
ASDAMGVSENTFNVLTNSDMEYGYVQDEDGNMEQLSDGLYSLLIQSQNRDVRKGAFDTLYAAYGQFQNSLASTLSGVVKK
HNYNAKVHKYDSAREAALSENNVPTKVYDTLIQEVDSHLDLLHRYVALRKKILRLKDLQMWDMYVPLTGKPALSYNFEEA
KEVAKKALAPLGEDYLKHVDYIFNNRVIDVVESKNKVTGAYSGGAYDTDPYELLNWEDNVDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDHITDPKTRAFILNYYLDSFKGTLFRQTQFAVFEQFIHEADAKGEPLTA
DTLDNVYGQLNQHYYGDSVEPGGDIALEWSRIPHFYYNFYVYQYATGFAAATALANKVVHGTDADREAYLGFLKAGSSDY
PTEIMKHAGVDMTKPDYLEDAFKTFEKRLNEFESLIEK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=643896 L0B74_RS09430 WP_249905623.1 1898530..1900326(+) (pepF) [Lactobacillus amylovorus strain S1]
ATGGCAATTCCAACAAGAAATGAAGTCCCTGAAAATTTGAAATGGGACTTAACCAGAATTTTTAAGACAGATGAAGACTG
GGAAGCAGCTTTTGACAAAGCAAAAGACGATGTTGAAAAGCTGGGAGCATTGAAAGGTACTTTGACTAAGTCTGGTAAAG
ATTTGTACGAAAGCTTAACCAAGATCTTGGCAGTTAAACGCGATGTCGAAAACATCTACGTTTATGCCACTATGTCTAGT
GACGTTGATACTTCTAACTCACACTATTTAGGCTACGTTAGCCGCGTGCAAACTTTGGCTAACCAATTCGAAGCTGTCAC
TAGTTTTATTAGCCCTGAGATCTTGAGCATCCCTAGCGACAAGTTAGCCCAATTTAAAAAGGACGAACCTCGCTTAAAGA
ACTACGAGCACTACCTTGAAACGATCACCAACAAGCGTCCTCACACTTTGCCAGCTGAAGAAGAAAAGATCATCGCTGAC
GCTAGTGACGCAATGGGTGTTTCAGAAAATACCTTTAACGTTTTAACCAACTCCGACATGGAATACGGCTACGTGCAAGA
CGAAGACGGCAACATGGAACAATTGTCTGACGGTTTATACTCACTTTTGATCCAATCACAAAACCGTGACGTCAGAAAAG
GCGCCTTTGACACACTTTACGCCGCTTATGGCCAATTCCAAAACTCACTTGCTTCTACGCTTTCTGGCGTGGTAAAGAAG
CACAACTATAACGCTAAGGTGCACAAGTATGACTCAGCTCGCGAAGCTGCATTGTCTGAAAACAACGTACCTACCAAGGT
TTACGACACTTTAATTCAAGAAGTTGATTCTCACCTTGATTTACTCCACCGTTATGTTGCGCTACGTAAGAAGATTTTAA
GACTCAAAGATTTACAAATGTGGGACATGTATGTGCCACTAACTGGTAAACCTGCTCTTTCCTATAACTTCGAAGAAGCA
AAAGAAGTTGCTAAGAAGGCACTCGCTCCACTGGGTGAAGACTACTTGAAGCACGTCGATTACATTTTTAACAACCGCGT
CATCGACGTTGTGGAATCAAAGAACAAGGTCACTGGTGCCTACTCTGGTGGTGCCTACGATACTGATCCATATGAACTTT
TGAACTGGGAAGACAACGTTGATTCACTTTACACATTAGTGCACGAAACTGGTCACTCAGTTCACTCTTGGTACACTCGT
AACACCCAACCTTACGTTTATGGTGACTACCCAATTTTCGTAGCTGAAATTGCTTCAACCACTAACGAAAACATTTTGAC
TGAATACTTCTTGGACCATATCACTGATCCTAAGACGCGTGCCTTTATCTTGAACTACTACCTTGATTCATTTAAGGGTA
CCTTGTTCCGGCAAACTCAATTCGCAGTGTTCGAGCAATTTATTCACGAAGCCGATGCTAAGGGTGAACCACTTACCGCT
GATACTTTGGACAACGTTTATGGTCAACTTAACCAACACTACTACGGTGACAGCGTTGAACCCGGCGGCGACATTGCACT
TGAATGGTCACGTATTCCACACTTCTACTACAACTTCTACGTTTACCAATATGCGACTGGTTTTGCGGCTGCGACTGCAC
TTGCTAACAAGGTTGTTCATGGTACTGACGCTGATAGAGAGGCATACCTTGGCTTCCTTAAGGCAGGTTCAAGTGATTAT
CCAACTGAAATCATGAAGCATGCTGGCGTTGATATGACTAAGCCTGACTACTTGGAAGATGCCTTCAAGACTTTTGAAAA
GCGTTTGAACGAATTTGAAAGCTTGATTGAAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.357

99.331

0.52