Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   A0K_RS04185 Genome accession   NZ_AAQW01000001
Coordinates   883983..884540 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa PACS2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 878983..889540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0K_RS04170 pilY1 879075..882566 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  A0K_RS04175 pilX 882578..883165 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  A0K_RS04180 pilW 883162..883986 (-) 825 WP_009875846.1 type 4a pilus minor pilin PilW -
  A0K_RS04185 pilV 883983..884540 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  A0K_RS04190 - 884531..885037 (-) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  A0K_RS04195 - 885143..885652 (-) 510 WP_003102595.1 GspH/FimT family pseudopilin -
  A0K_RS04200 thiO 885787..886881 (+) 1095 WP_003145981.1 glycine oxidase ThiO -
  A0K_RS04205 pilR 886927..888264 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=64389 A0K_RS04185 WP_003119423.1 883983..884540(-) (pilV) [Pseudomonas aeruginosa PACS2]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=64389 A0K_RS04185 WP_003119423.1 883983..884540(-) (pilV) [Pseudomonas aeruginosa PACS2]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTTAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995

Multiple sequence alignment