Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | L0Y20_RS18365 | Genome accession | NZ_CP090596 |
| Coordinates | 4066918..4067934 (-) | Length | 338 a.a. |
| NCBI ID | WP_256598913.1 | Uniprot ID | - |
| Organism | Pectobacterium aroidearum strain QJ003 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4061918..4072934
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0Y20_RS18350 (L0Y20_18325) | nsrR | 4062283..4062708 (-) | 426 | WP_015841587.1 | nitric oxide-sensing transcriptional repressor NsrR | - |
| L0Y20_RS18355 (L0Y20_18330) | - | 4063025..4064596 (+) | 1572 | WP_180778637.1 | methyl-accepting chemotaxis protein | - |
| L0Y20_RS18360 (L0Y20_18335) | - | 4065123..4066949 (+) | 1827 | WP_181845903.1 | diguanylate cyclase | - |
| L0Y20_RS18365 (L0Y20_18340) | pilT | 4066918..4067934 (-) | 1017 | WP_256598913.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| L0Y20_RS18370 (L0Y20_18345) | - | 4067956..4068669 (+) | 714 | WP_194430992.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| L0Y20_RS18375 (L0Y20_18350) | proC | 4068760..4069581 (+) | 822 | WP_015841592.1 | pyrroline-5-carboxylate reductase | - |
| L0Y20_RS18380 (L0Y20_18355) | - | 4069630..4070184 (+) | 555 | WP_010295003.1 | YggT family protein | - |
| L0Y20_RS18385 (L0Y20_18360) | yggU | 4070181..4070471 (+) | 291 | WP_010279110.1 | DUF167 family protein YggU | - |
| L0Y20_RS18390 (L0Y20_18365) | - | 4070489..4071082 (+) | 594 | WP_256598914.1 | XTP/dITP diphosphatase | - |
| L0Y20_RS18395 (L0Y20_18370) | hemW | 4071075..4072214 (+) | 1140 | WP_256598915.1 | radical SAM family heme chaperone HemW | - |
| L0Y20_RS18400 (L0Y20_18375) | - | 4072446..4072706 (+) | 261 | WP_072014188.1 | type II toxin-antitoxin system ParD family antitoxin | - |
Sequence
Protein
Download Length: 338 a.a. Molecular weight: 36910.17 Da Isoelectric Point: 6.9179
>NTDB_id=643844 L0Y20_RS18365 WP_256598913.1 4066918..4067934(-) (pilT) [Pectobacterium aroidearum strain QJ003]
MELDEWIARSVKHNASDLHLCSGHPPVLRVDGRLQPENTLPRLTSEQVAQWCDAWLEPAQREQLRQFGQIDGALMLPDGQ
RLRVNVFRQREGLSAALRIIPSVQPSLDGLHAPPVLSTLLEKPNGLILITGATGSGKSTTLAAMLGALNDSRDRHVITLE
DPIEFIHASRRCLIQQREIGAHSASFAQALRATLREDPDVILLGELRDTETIRLALTAAETGHLVLSTLHTRSASQAVDR
LIDVFPGEEKAYVRSQLATCLQAVVTQRLLPSAHGGRIALYEVLTATAAVGNLIREGKTHQLPGLIQTGTAAGMQTFEQS
YQQRCRDGLISHNCALAV
MELDEWIARSVKHNASDLHLCSGHPPVLRVDGRLQPENTLPRLTSEQVAQWCDAWLEPAQREQLRQFGQIDGALMLPDGQ
RLRVNVFRQREGLSAALRIIPSVQPSLDGLHAPPVLSTLLEKPNGLILITGATGSGKSTTLAAMLGALNDSRDRHVITLE
DPIEFIHASRRCLIQQREIGAHSASFAQALRATLREDPDVILLGELRDTETIRLALTAAETGHLVLSTLHTRSASQAVDR
LIDVFPGEEKAYVRSQLATCLQAVVTQRLLPSAHGGRIALYEVLTATAAVGNLIREGKTHQLPGLIQTGTAAGMQTFEQS
YQQRCRDGLISHNCALAV
Nucleotide
Download Length: 1017 bp
>NTDB_id=643844 L0Y20_RS18365 WP_256598913.1 4066918..4067934(-) (pilT) [Pectobacterium aroidearum strain QJ003]
ATGGAATTGGATGAGTGGATAGCGCGTAGTGTAAAACATAATGCCTCAGATCTGCACCTTTGTAGCGGCCACCCGCCAGT
GTTACGTGTCGATGGGCGGCTACAGCCTGAAAATACCTTACCACGTTTAACGTCAGAGCAGGTGGCACAATGGTGCGATG
CCTGGCTTGAACCCGCTCAGAGAGAACAACTGCGGCAGTTTGGTCAGATAGACGGCGCGTTAATGCTGCCTGATGGGCAG
CGTCTGCGAGTCAATGTGTTTCGCCAGCGAGAAGGGCTGTCTGCGGCGCTGCGTATTATCCCGTCCGTTCAGCCGTCATT
GGACGGGCTACACGCGCCACCCGTTCTGTCGACGCTGCTGGAGAAACCGAACGGGCTGATCCTGATTACCGGAGCGACGG
GGAGCGGTAAATCCACGACGCTGGCGGCAATGCTTGGGGCGTTAAATGACAGTCGCGATCGCCATGTGATTACGCTGGAG
GATCCGATCGAGTTTATCCATGCCAGCCGACGCTGCCTGATTCAACAGCGAGAGATCGGTGCGCACAGCGCGTCTTTTGC
ACAGGCGCTACGGGCCACCTTGCGGGAAGATCCCGATGTGATTTTGCTGGGAGAATTGCGCGATACGGAGACGATTCGGC
TGGCGCTGACGGCGGCGGAAACCGGTCATCTCGTGCTATCCACGCTGCATACGCGCAGTGCATCGCAGGCGGTCGATCGT
CTGATTGACGTCTTTCCCGGTGAAGAGAAAGCCTATGTTCGCAGTCAGCTAGCCACCTGTTTGCAGGCCGTGGTTACGCA
AAGGTTGTTGCCTTCAGCACACGGCGGTCGCATTGCGCTTTATGAAGTGCTGACGGCGACAGCGGCAGTCGGCAACCTGA
TTCGGGAAGGGAAAACGCATCAGCTTCCCGGCCTGATTCAAACGGGAACGGCTGCGGGCATGCAAACGTTCGAGCAAAGC
TACCAGCAGCGCTGTCGGGATGGGCTTATTTCACACAATTGCGCCCTTGCCGTTTAG
ATGGAATTGGATGAGTGGATAGCGCGTAGTGTAAAACATAATGCCTCAGATCTGCACCTTTGTAGCGGCCACCCGCCAGT
GTTACGTGTCGATGGGCGGCTACAGCCTGAAAATACCTTACCACGTTTAACGTCAGAGCAGGTGGCACAATGGTGCGATG
CCTGGCTTGAACCCGCTCAGAGAGAACAACTGCGGCAGTTTGGTCAGATAGACGGCGCGTTAATGCTGCCTGATGGGCAG
CGTCTGCGAGTCAATGTGTTTCGCCAGCGAGAAGGGCTGTCTGCGGCGCTGCGTATTATCCCGTCCGTTCAGCCGTCATT
GGACGGGCTACACGCGCCACCCGTTCTGTCGACGCTGCTGGAGAAACCGAACGGGCTGATCCTGATTACCGGAGCGACGG
GGAGCGGTAAATCCACGACGCTGGCGGCAATGCTTGGGGCGTTAAATGACAGTCGCGATCGCCATGTGATTACGCTGGAG
GATCCGATCGAGTTTATCCATGCCAGCCGACGCTGCCTGATTCAACAGCGAGAGATCGGTGCGCACAGCGCGTCTTTTGC
ACAGGCGCTACGGGCCACCTTGCGGGAAGATCCCGATGTGATTTTGCTGGGAGAATTGCGCGATACGGAGACGATTCGGC
TGGCGCTGACGGCGGCGGAAACCGGTCATCTCGTGCTATCCACGCTGCATACGCGCAGTGCATCGCAGGCGGTCGATCGT
CTGATTGACGTCTTTCCCGGTGAAGAGAAAGCCTATGTTCGCAGTCAGCTAGCCACCTGTTTGCAGGCCGTGGTTACGCA
AAGGTTGTTGCCTTCAGCACACGGCGGTCGCATTGCGCTTTATGAAGTGCTGACGGCGACAGCGGCAGTCGGCAACCTGA
TTCGGGAAGGGAAAACGCATCAGCTTCCCGGCCTGATTCAAACGGGAACGGCTGCGGGCATGCAAACGTTCGAGCAAAGC
TACCAGCAGCGCTGTCGGGATGGGCTTATTTCACACAATTGCGCCCTTGCCGTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.