Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0Y20_RS02415 Genome accession   NZ_CP090596
Coordinates   546015..547397 (-) Length   460 a.a.
NCBI ID   WP_012773160.1    Uniprot ID   A0AAW3SUS5
Organism   Pectobacterium aroidearum strain QJ003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 541015..552397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y20_RS02380 (L0Y20_02380) - 541142..541729 (-) 588 WP_012773156.1 YecA family protein -
  L0Y20_RS02385 (L0Y20_02385) zapA 541922..542251 (+) 330 WP_012773157.1 cell division protein ZapA -
  L0Y20_RS02395 (L0Y20_02395) - 542548..543189 (+) 642 WP_256599347.1 5-formyltetrahydrofolate cyclo-ligase -
  L0Y20_RS02400 (L0Y20_02400) nadR 543186..544439 (-) 1254 WP_256599348.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  L0Y20_RS02405 (L0Y20_02405) - 544523..545449 (-) 927 WP_256599349.1 LysR substrate-binding domain-containing protein -
  L0Y20_RS02410 (L0Y20_02410) - 545568..545966 (+) 399 WP_256599350.1 VOC family protein -
  L0Y20_RS02415 (L0Y20_02415) radA 546015..547397 (-) 1383 WP_012773160.1 DNA repair protein RadA Machinery gene
  L0Y20_RS02420 (L0Y20_02420) serB 547415..548392 (-) 978 WP_012773161.1 phosphoserine phosphatase -
  L0Y20_RS02425 (L0Y20_02425) - 548545..549243 (+) 699 WP_180778881.1 YtjB family periplasmic protein -
  L0Y20_RS02430 (L0Y20_02430) - 549297..550214 (-) 918 WP_012773163.1 hypothetical protein -
  L0Y20_RS02435 (L0Y20_02435) prfC 550515..552104 (+) 1590 WP_180778879.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49608.13 Da        Isoelectric Point: 7.4218

>NTDB_id=643831 L0Y20_RS02415 WP_012773160.1 546015..547397(-) (radA) [Pectobacterium aroidearum strain QJ003]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKTPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=643831 L0Y20_RS02415 WP_012773160.1 546015..547397(-) (radA) [Pectobacterium aroidearum strain QJ003]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGATTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGCCATGCCTGGAACACCATTACCGAAGTGCGTCTGGCATCGGCGTCAGTATCACGTTCCGACCGCCTCACTGGCTATG
CGGGTGAGAGTGCTGGCGTCAGCCGGGTACAAAAACTTTCGGAAATCAGCCTTGAAGCCCTGCCCCGTTTTTCTACCGGT
TTTCAGGAATTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCTGGCAGCGCGATTCTGATCGGCGGTAACCCCGGAGCGGG
TAAAAGTACCCTGCTGCTGCAAACGCTCTGCAAGCTGTCAGAGAATATGAAAACCCTGTACGTCACCGGGGAAGAATCCT
TGCAGCAGGTGGCGATGCGGGCACACCGCCTCAATTTACCGACACAGAATCTCAATATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGTTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCCCCCGGCAGCGTAGCGCAGGTGCGCGAAACCGCAGCCTACCTGACGCGCTTCGCCAAAACGCGCGGCGTCG
CCATCGTCATGGTCGGCCACGTCACCAAAGACGGCTCGCTCGCCGGGCCTAAAGTGTTGGAACACTGCATCGACTGCTCC
GTGTTGCTGGATGGCGATGCCGATTCGCGCTTCCGCACCCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTTAACGAACT
GGGTGTATTCGCGATGACGGAGCAAGGACTACGCGAAGTCAGCAATCCATCGGCGATTTTCCTTAGCCGCGGGGACGAAG
TGACGTCCGGCAGTTCCGTTATGGTGGTGTGGGAAGGCACGCGCCCGCTGCTGGTCGAGATTCAGGCACTGGTGGATCAA
TCGATGATGTCGAACCCGCGCCGCGTGGCGGTCGGGCTGGAGCAAAATCGGTTAGCCATACTGCTAGCTGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCAGATCAGGATGTGTTCGTGAATGTCGTCGGCGGCGTCAAAGTCACCGAAACCAGCGCTG
ATCTGGCGCTGCTGTTGTCACTGGTCTCCAGCTTCCGCGACCGCCCGCTACCACAGGATCTCGTCATCTTCGGTGAGGTT
GGTCTGGCGGGCGAAATCCGCCCGGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAACGCCTGCCAGTATGCAGGTATTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCGATCTTAGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.696

100

0.487
  radA Streptococcus mitis NCTC 12261

43.421

99.13

0.43
  radA Streptococcus pneumoniae Rx1

43.421

99.13

0.43
  radA Streptococcus pneumoniae D39

43.421

99.13

0.43
  radA Streptococcus pneumoniae R6

43.421

99.13

0.43
  radA Streptococcus pneumoniae TIGR4

43.421

99.13

0.43
  radA Streptococcus mitis SK321

43.421

99.13

0.43