Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0Y30_RS19070 Genome accession   NZ_CP090591
Coordinates   4268566..4269948 (+) Length   460 a.a.
NCBI ID   WP_256542467.1    Uniprot ID   -
Organism   Pectobacterium aroidearum strain QJ313     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4263566..4274948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y30_RS19050 (L0Y30_19025) prfC 4263849..4265438 (-) 1590 WP_180778879.1 peptide chain release factor 3 -
  L0Y30_RS19055 (L0Y30_19030) - 4265744..4266661 (+) 918 WP_256542465.1 hypothetical protein -
  L0Y30_RS19060 (L0Y30_19035) - 4266716..4267414 (-) 699 WP_256542466.1 YtjB family periplasmic protein -
  L0Y30_RS19065 (L0Y30_19040) serB 4267571..4268548 (+) 978 WP_012773161.1 phosphoserine phosphatase -
  L0Y30_RS19070 (L0Y30_19045) radA 4268566..4269948 (+) 1383 WP_256542467.1 DNA repair protein RadA Machinery gene
  L0Y30_RS19075 (L0Y30_19050) nadR 4270080..4271333 (+) 1254 WP_012773159.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  L0Y30_RS19080 (L0Y30_19055) - 4271330..4271971 (-) 642 WP_256542468.1 5-formyltetrahydrofolate cyclo-ligase -
  L0Y30_RS19090 (L0Y30_19065) zapA 4272269..4272598 (-) 330 WP_012773157.1 cell division protein ZapA -
  L0Y30_RS19095 (L0Y30_19070) - 4272791..4273378 (+) 588 WP_012773156.1 YecA family protein -
  L0Y30_RS19100 (L0Y30_19075) pepP 4273469..4274788 (+) 1320 WP_194431752.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49638.16 Da        Isoelectric Point: 7.4218

>NTDB_id=643732 L0Y30_RS19070 WP_256542467.1 4268566..4269948(+) (radA) [Pectobacterium aroidearum strain QJ313]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASTSVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKTPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=643732 L0Y30_RS19070 WP_256542467.1 4268566..4269948(+) (radA) [Pectobacterium aroidearum strain QJ313]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGATTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGCCATGCCTGGAACACCATTACCGAAGTGCGTCTGGCATCGACGTCAGTATCACGTTCCGACCGCCTCACCGGCTATG
CGGGTGAGAGTGCTGGCGTCAGCCGGGTACAAAAACTTTCGGAAATCAGCCTTGAAGCCCTGCCACGGTTTTCTACCGGT
TTTCAGGAGTTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCCGGCAGCGCGATTCTGATCGGCGGTAACCCCGGCGCGGG
TAAAAGTACCCTGCTGCTGCAAACGCTCTGCAAGCTGTCAGAGAATATGAAAACCCTGTACGTCACCGGGGAAGAATCCT
TACAGCAGGTGGCGATGCGGGCACACCGCCTCAATTTACCGACCCAGAATCTCAATATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCCCCCGGCAGCGTAGCGCAGGTGCGCGAAACCGCAGCCTACCTGACGCGCTTTGCCAAAACGCGCGGCGTCG
CCATCGTCATGGTCGGCCACGTCACCAAGGACGGCTCGCTCGCCGGACCGAAAGTATTAGAACACTGCATCGACTGTTCC
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACCCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTTAACGAACT
GGGTGTATTCGCGATGACGGAGCAAGGACTACGCGAGGTCAGCAATCCGTCTGCGATTTTCCTTAGCCGCGGGGACGAAG
TGACGTCCGGCAGTTCCGTTATGGTGGTGTGGGAAGGCACGCGCCCGCTGCTGGTCGAGATTCAGGCACTGGTGGATCAA
TCGATGATGTCGAACCCGCGCCGCGTGGCGGTCGGGCTGGAGCAAAATCGGTTAGCCATACTGCTAGCGGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCAGATCAGGATGTGTTCGTGAATGTCGTCGGCGGTGTCAAAGTCACCGAAACCAGCGCCG
ACCTCGCGTTGCTATTATCACTGGTTTCCAGCTTCCGCGACCGCCCGCTACCACAGGATCTCGTCATCTTCGGTGAGGTC
GGTCTGGCGGGCGAAATCCGCCCGGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAACGCCTGCCAGTATGCAGGTATTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCGATCTTAGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.478

100

0.485
  radA Streptococcus mitis NCTC 12261

43.421

99.13

0.43
  radA Streptococcus pneumoniae Rx1

43.421

99.13

0.43
  radA Streptococcus pneumoniae D39

43.421

99.13

0.43
  radA Streptococcus pneumoniae R6

43.421

99.13

0.43
  radA Streptococcus pneumoniae TIGR4

43.421

99.13

0.43
  radA Streptococcus mitis SK321

43.421

99.13

0.43