Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OIO53_RS09025 Genome accession   NZ_CP107579
Coordinates   1854251..1854886 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain 1326525-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1849251..1859886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO53_RS09000 (OIO53_09005) - 1850091..1851104 (+) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -
  OIO53_RS09005 (OIO53_09010) murU 1851104..1851793 (+) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  OIO53_RS09010 (OIO53_09015) rsmG 1851881..1852513 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  OIO53_RS09015 (OIO53_09020) - 1852535..1853317 (+) 783 WP_000057212.1 ParA family protein -
  OIO53_RS09020 (OIO53_09025) - 1853314..1854201 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  OIO53_RS09025 (OIO53_09030) exbB 1854251..1854886 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OIO53_RS09030 (OIO53_09035) - 1854902..1855330 (+) 429 WP_000669685.1 biopolymer transporter ExbD -
  OIO53_RS09035 (OIO53_09040) msbA 1855327..1857054 (+) 1728 WP_031960445.1 lipid A export permease/ATP-binding protein MsbA -
  OIO53_RS09040 (OIO53_09045) lpxK 1857057..1858067 (+) 1011 WP_031960446.1 tetraacyldisaccharide 4'-kinase -
  OIO53_RS09045 (OIO53_09050) kdsB 1858077..1858838 (+) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OIO53_RS09050 (OIO53_09055) - 1858850..1859830 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=643681 OIO53_RS09025 WP_000264037.1 1854251..1854886(+) (exbB) [Acinetobacter baumannii strain 1326525-1]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=643681 OIO53_RS09025 WP_000264037.1 1854251..1854886(+) (exbB) [Acinetobacter baumannii strain 1326525-1]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCACCTCTACTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTGATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393