Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0Y25_RS20005 Genome accession   NZ_CP090588
Coordinates   4421949..4423331 (+) Length   460 a.a.
NCBI ID   WP_012773160.1    Uniprot ID   A0AAW3SUS5
Organism   Pectobacterium aroidearum strain AK042     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4416949..4428331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y25_RS19985 (L0Y25_19960) prfC 4417238..4418827 (-) 1590 WP_180778879.1 peptide chain release factor 3 -
  L0Y25_RS19990 (L0Y25_19965) - 4419128..4420045 (+) 918 WP_256553891.1 hypothetical protein -
  L0Y25_RS19995 (L0Y25_19970) - 4420100..4420801 (-) 702 WP_256553892.1 YtjB family periplasmic protein -
  L0Y25_RS20000 (L0Y25_19975) serB 4420954..4421931 (+) 978 WP_256553893.1 phosphoserine phosphatase -
  L0Y25_RS20005 (L0Y25_19980) radA 4421949..4423331 (+) 1383 WP_012773160.1 DNA repair protein RadA Machinery gene
  L0Y25_RS20010 (L0Y25_19985) nadR 4423463..4424716 (+) 1254 WP_012773159.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  L0Y25_RS20015 (L0Y25_19990) - 4424713..4425354 (-) 642 WP_256553894.1 5-formyltetrahydrofolate cyclo-ligase -
  L0Y25_RS20025 (L0Y25_20000) zapA 4425652..4425981 (-) 330 WP_012773157.1 cell division protein ZapA -
  L0Y25_RS20030 (L0Y25_20005) - 4426174..4426761 (+) 588 WP_012773156.1 YecA family protein -
  L0Y25_RS20035 (L0Y25_20010) pepP 4426852..4428171 (+) 1320 WP_194431752.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49608.13 Da        Isoelectric Point: 7.4218

>NTDB_id=643661 L0Y25_RS20005 WP_012773160.1 4421949..4423331(+) (radA) [Pectobacterium aroidearum strain AK042]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKTPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=643661 L0Y25_RS20005 WP_012773160.1 4421949..4423331(+) (radA) [Pectobacterium aroidearum strain AK042]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGATTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGCCATGCCTGGAACACCATTACCGAAGTGCGTCTGGCATCGGCGTCAGTATCACGCTCCGACCGCCTCACCGGCTATG
CGGGTGAGAGTGCTGGCGTCAGCCGGGTACAAAAGCTTTCAGAAATCAGCCTTGAAGCCCTGCCCCGTTTTTCTACCGGT
TTTCAGGAATTTGACCGCGTTTTGGGCGGCGGCGTCGTTCCCGGCAGCGCGATTCTGATCGGCGGTAACCCCGGCGCGGG
TAAAAGTACCCTGCTGCTGCAAACGCTCTGCAAGCTGTCAGAGAATATGAAAACCCTGTACGTCACCGGGGAAGAATCTT
TGCAGCAGGTAGCGATGCGGGCACACCGCCTCAATTTACCGACCCAGAATCTCAATATGCTGTCGGAAACCAGCATCGAA
CAAATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTTATGCATCTCGCCGATAT
TCAATCGTCCCCCGGCAGCGTAGCGCAGGTGCGAGAAACCGCAGCCTACCTGACGCGCTTTGCCAAAACGCGCGGCGTCG
CCATCGTCATGGTCGGCCACGTCACCAAAGATGGCTCGCTCGCCGGACCGAAAGTATTAGAACACTGCATCGACTGCTCC
GTGTTGCTGGATGGCGATGCCGATTCGCGCTTCCGCACCCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTTAACGAACT
GGGTGTATTCGCGATGACGGAGCAAGGACTACGCGAAGTCAGCAATCCATCGGCGATTTTCCTTAGCCGCGGGGACGAAG
TGACGTCCGGCAGTTCCGTTATGGTGGTGTGGGAAGGCACGCGCCCGCTGCTGGTCGAGATTCAGGCGCTGGTGGATCAA
TCGATGATGTCGAACCCGCGCCGCGTGGCGGTCGGGCTGGAGCAAAATCGGTTAGCCATACTGCTAGCGGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCAGATCAGGATGTGTTCGTAAATGTCGTCGGCGGCGTCAAAGTCACCGAAACCAGCGCCG
ATCTGGCGCTGCTGTTGTCACTGGTCTCCAGCTTCCGCGACCGCCCGCTGCCACAGGATCTCGTCATCTTCGGTGAAGTC
GGTCTGGCGGGCGAAATCCGCCCGGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAACGCCTGCCAGTATGCAGGTATTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCGATCTTAGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.696

100

0.487
  radA Streptococcus mitis NCTC 12261

43.421

99.13

0.43
  radA Streptococcus pneumoniae Rx1

43.421

99.13

0.43
  radA Streptococcus pneumoniae D39

43.421

99.13

0.43
  radA Streptococcus pneumoniae R6

43.421

99.13

0.43
  radA Streptococcus pneumoniae TIGR4

43.421

99.13

0.43
  radA Streptococcus mitis SK321

43.421

99.13

0.43