Detailed information NTG0643653

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L0Y25_RS07020
• Genome accession: NZ_CP090588
• Coordinates: 1561021..1561866 (+)
• Length: 281 a.a.
• NCBI ID: WP_181845365.1
• Uniprot ID: A0AAW3SY54
• Organism: Pectobacterium aroidearum strain AK042
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1556021..1566866

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0Y25_RS06990 (L0Y25_06980)	gspI	1556414..1556779 (+)	366	WP_256554522.1	type II secretion system minor pseudopilin GspI	-
L0Y25_RS06995 (L0Y25_06985)	gspJ	1556779..1557429 (+)	651	WP_181845368.1	type II secretion system minor pseudopilin GspJ	-
L0Y25_RS07000 (L0Y25_06990)	gspK	1557426..1558412 (+)	987	WP_015841042.1	type II secretion system minor pseudopilin GspK	-
L0Y25_RS07005 (L0Y25_06995)	gspL	1558409..1559686 (+)	1278	WP_256554523.1	type II secretion system protein GspL	-
L0Y25_RS07010 (L0Y25_07000)	gspM	1559683..1560177 (+)	495	WP_181829031.1	type II secretion system protein GspM	-
L0Y25_RS07015 (L0Y25_07005)	-	1560167..1560913 (+)	747	WP_015841039.1	type II secretion system protein N	-
L0Y25_RS07020 (L0Y25_07010)	pilD	1561021..1561866 (+)	846	WP_181845365.1	A24 family peptidase	Machinery gene
L0Y25_RS07025 (L0Y25_07015)	ypdK	1562009..1562083 (-)	75	WP_099606229.1	membrane protein YpdK	-
L0Y25_RS07030 (L0Y25_07020)	-	1562440..1563465 (-)	1026	WP_256554524.1	LLM class flavin-dependent oxidoreductase	-
L0Y25_RS07035 (L0Y25_07025)	-	1563942..1565006 (+)	1065	WP_256554525.1	ABC transporter substrate-binding protein	-
L0Y25_RS07040 (L0Y25_07030)	-	1565003..1566040 (+)	1038	WP_181838176.1	iron ABC transporter permease	-
L0Y25_RS07045 (L0Y25_07035)	-	1566042..1566812 (+)	771	WP_181848772.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31262.36 Da
• Isoelectric Point: 7.5855

>NTDB_id=643653 L0Y25_RS07020 WP_181845365.1 1561021..1561866(+) (pilD) [Pectobacterium aroidearum strain AK042]
MDDLREFALVFPAWWYGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELQTGVTNTEHVTSYNLCWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQPVSVQYPLVEVITMLAFLVAGLLWLPGMALCGALILLSFLVVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSETFVPLRDAVVGAMAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGVRKEDTAKPLAFGPWLAIGGVFGVIINGLYL

Nucleotide

• Length: 846 bp

>NTDB_id=643653 L0Y25_RS07020 WP_181845365.1 1561021..1561866(+) (pilD) [Pectobacterium aroidearum strain AK042]
GTGGACGATTTAAGGGAATTCGCACTGGTATTTCCGGCATGGTGGTATGGTGCGCTGGGCGTATTGGGCTTGATTGTTGG
CAGTTTTCTGAACGTCGTGATTTACCGCCTGCCGATTATGTTAGAACGCCGCTGGCGGCAGGACATCGAACTGCAAACGG
GTGTGACCAATACTGAGCATGTGACGAGTTACAACCTGTGTTGGCCGCCTTCGTCTTGCCCGCACTGTCAGCAGGCGATT
GCGGTGAAAGATAACATCCCGTTATTCAGCTGGCTGTGGCTACGCGGCCGCTCCCGCTGCTGTCATCAGCCAGTGTCTGT
GCAGTATCCGCTGGTGGAAGTCATTACGATGCTGGCTTTTCTGGTCGCAGGGTTACTGTGGCTGCCCGGCATGGCGTTAT
GCGGGGCGCTGATTCTGCTGTCCTTCCTGGTGGTTTTGACCGTCATTGATATAAAAACGTTACTGCTGCCAGATGTGCTT
ACGCTTTCGCTCTTGTGGATGGGACTGCTGTTTAATCTGTCGGAGACCTTTGTCCCATTACGCGATGCCGTAGTAGGCGC
GATGGCGGGCTATTTGTCCCTGTGGCTACTTTATTGGGTATTTAAATATGCCACAGGCAAAGAAGCGCTAGGGTATGGTG
ATTTTAAGTTACTCGCCGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTCTTGGTGGCGGCGCTGAGC
GGGCTGGTCGTTACTCTCATCTGGCGCGGGGTGCGTAAAGAAGATACGGCTAAACCGTTGGCCTTTGGCCCCTGGCTGGC
GATTGGCGGCGTATTCGGTGTGATAATAAACGGACTCTATCTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.741	96.085	0.488
pilD	Neisseria gonorrhoeae MS11	49.416	91.459	0.452
pilD	Vibrio campbellii strain DS40M4	46.85	90.391	0.423
pilD	Acinetobacter baumannii D1279779	41.971	97.509	0.409
pilD	Acinetobacter nosocomialis M2	41.971	97.509	0.409