Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   L0Y14_RS14210 Genome accession   NZ_CP090569
Coordinates   3148327..3149673 (+) Length   448 a.a.
NCBI ID   WP_005960802.1    Uniprot ID   G2DC91
Organism   Candidatus Endoriftia persephone isolate Tica-EPR-9o50.N     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3143327..3154673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y14_RS14185 (L0Y14_14165) - 3143405..3144220 (+) 816 WP_005960797.1 outer membrane protein assembly factor BamD -
  L0Y14_RS14190 (L0Y14_14170) - 3144267..3144605 (-) 339 WP_005960798.1 P-II family nitrogen regulator -
  L0Y14_RS14195 (L0Y14_14175) - 3144700..3146328 (-) 1629 WP_240991623.1 NAD+ synthase -
  L0Y14_RS14200 (L0Y14_14180) - 3146431..3146664 (+) 234 WP_005960800.1 PP0621 family protein -
  L0Y14_RS14205 (L0Y14_14185) - 3146686..3148326 (+) 1641 WP_005960801.1 sensor histidine kinase -
  L0Y14_RS14210 (L0Y14_14190) pilR 3148327..3149673 (+) 1347 WP_005960802.1 sigma-54-dependent transcriptional regulator Regulator
  L0Y14_RS14215 (L0Y14_14195) - 3149701..3151866 (-) 2166 WP_139042075.1 sulfatase-like hydrolase/transferase -
  L0Y14_RS16730 - 3152343..3152816 (+) 474 WP_006474483.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  L0Y14_RS16410 - 3152978..3153415 (+) 438 WP_006474484.1 type IV pilin protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49679.06 Da        Isoelectric Point: 5.9933

>NTDB_id=643543 L0Y14_RS14210 WP_005960802.1 3148327..3149673(+) (pilR) [Candidatus Endoriftia persephone isolate Tica-EPR-9o50.N]
MTQPLALVVDDEPDICELLEITLMRMGIETRAALNLAQAHQHLAGEHFDLCLTDMRLPDGNGIELVRHISQHHPALPVAM
ITAHGNMESAIEALKAGAFDFVSKPVDLAILRKLVEKALKLSPERQTAAPTASDADAGRQLLGNSRAMQRIRELVQKLAR
SQAPVYISGESGTGKELVARMIHDQGPRADQEFVAVNCGAIPQELMESELFGYMKGSFTGASSDRQGLFQAADGGTLFLD
EVADLPLQMQVKLLRAIQEKRVRPVGGHREVSVDVRIISATHKNLSEMVENGSFRQDLFYRINVIELPLPPLRERPEDIP
LLIDSIFTRLCSNSELPSPCLSPDALQALQRHPFPGNVRELENILERAITLCEGDQLSARDLQLPEVNTEPTRRTSKPLG
DMLGDIERQAIIKALEETRWNRTAAARKLGMSLRSLRYRLSKLGLDRD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=643543 L0Y14_RS14210 WP_005960802.1 3148327..3149673(+) (pilR) [Candidatus Endoriftia persephone isolate Tica-EPR-9o50.N]
ATGACGCAGCCGTTGGCGCTGGTCGTGGATGACGAACCCGACATCTGCGAACTACTGGAGATCACCCTGATGCGTATGGG
CATAGAGACCCGTGCCGCACTCAACCTCGCCCAGGCCCATCAACATCTCGCCGGCGAGCACTTCGATCTCTGCCTCACCG
ACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTGCGCCACATCAGCCAACACCACCCGGCCCTGCCGGTGGCGATG
ATCACCGCCCACGGCAACATGGAGTCGGCGATCGAGGCGCTGAAGGCCGGGGCCTTCGACTTCGTCTCCAAGCCGGTGGA
TCTGGCGATCCTGCGCAAACTGGTAGAGAAGGCGCTCAAGCTCTCACCCGAGCGCCAAACAGCCGCGCCGACAGCCTCTG
ATGCAGATGCCGGCAGGCAACTGCTCGGCAACTCCCGCGCGATGCAGCGGATCCGCGAGCTGGTACAGAAACTCGCCCGC
AGCCAGGCGCCGGTCTACATCAGCGGCGAATCGGGCACCGGCAAGGAACTGGTGGCGCGCATGATCCACGACCAAGGTCC
CCGCGCCGACCAAGAGTTTGTCGCGGTCAACTGCGGCGCCATCCCTCAAGAACTGATGGAGAGCGAACTGTTTGGTTATA
TGAAGGGGAGCTTCACCGGCGCCAGCAGCGACCGGCAGGGACTGTTCCAGGCCGCCGACGGCGGCACCCTGTTTCTCGAC
GAGGTGGCCGATCTACCGCTGCAGATGCAGGTCAAACTGCTGCGGGCGATCCAAGAGAAGCGAGTGCGCCCGGTGGGCGG
CCACCGGGAGGTCTCGGTGGATGTGCGCATCATCAGCGCCACCCATAAAAATCTCAGCGAGATGGTGGAGAACGGCAGCT
TTCGCCAAGACCTCTTCTACCGCATCAACGTGATTGAGCTGCCGCTTCCGCCGCTGCGAGAGCGTCCGGAGGATATCCCG
CTACTGATCGACAGCATTTTTACCCGCCTCTGCAGCAACTCGGAGCTGCCGTCGCCCTGTCTCAGCCCGGATGCGCTGCA
AGCGTTGCAGCGCCACCCTTTCCCCGGCAACGTACGTGAACTGGAGAACATTCTGGAACGGGCGATCACCCTCTGCGAGG
GTGACCAGCTGAGCGCTCGCGACCTACAGCTTCCCGAGGTCAACACAGAGCCCACCAGGCGAACCAGCAAACCCCTTGGC
GACATGCTGGGGGATATTGAACGTCAGGCGATCATCAAAGCCCTGGAGGAGACCCGCTGGAACCGCACCGCTGCAGCCAG
GAAACTCGGCATGAGCCTAAGATCGCTGCGTTATCGGCTCTCCAAGCTTGGGCTGGACAGGGACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-443)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(141-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2DC91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.971

100

0.634
  pilR Acinetobacter baumannii strain A118

50.107

100

0.522
  luxO Vibrio cholerae strain A1552

36.08

100

0.362