Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0Y14_RS11055 Genome accession   NZ_CP090569
Coordinates   2462242..2463615 (-) Length   457 a.a.
NCBI ID   WP_006473909.1    Uniprot ID   G2FCF8
Organism   Candidatus Endoriftia persephone isolate Tica-EPR-9o50.N     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2457242..2468615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y14_RS11035 (L0Y14_11020) - 2457676..2459148 (-) 1473 WP_005964996.1 sigma-54 dependent transcriptional regulator -
  L0Y14_RS11040 (L0Y14_11025) - 2459589..2460881 (+) 1293 WP_005964992.1 HlyC/CorC family transporter -
  L0Y14_RS11045 (L0Y14_11030) - 2461221..2461856 (+) 636 WP_005964989.1 FHA domain-containing protein -
  L0Y14_RS11050 (L0Y14_11035) - 2461875..2462234 (+) 360 WP_006473907.1 PilZ domain-containing protein -
  L0Y14_RS11055 (L0Y14_11040) radA 2462242..2463615 (-) 1374 WP_006473909.1 DNA repair protein RadA Machinery gene
  L0Y14_RS11060 (L0Y14_11045) alr 2463602..2464705 (-) 1104 WP_006473911.1 alanine racemase -
  L0Y14_RS11065 (L0Y14_11050) dnaB 2464705..2466111 (-) 1407 WP_006473913.1 replicative DNA helicase -
  L0Y14_RS11070 (L0Y14_11055) rplI 2466373..2466822 (-) 450 WP_006473914.1 50S ribosomal protein L9 -
  L0Y14_RS11075 (L0Y14_11060) - 2466841..2467767 (-) 927 WP_005964970.1 DUF2232 domain-containing protein -
  L0Y14_RS11080 (L0Y14_11065) rpsR 2467798..2468022 (-) 225 WP_005964967.1 30S ribosomal protein S18 -
  L0Y14_RS11085 (L0Y14_11070) rpsF 2468026..2468505 (-) 480 WP_040818751.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48717.94 Da        Isoelectric Point: 7.9829

>NTDB_id=643538 L0Y14_RS11055 WP_006473909.1 2462242..2463615(-) (radA) [Candidatus Endoriftia persephone isolate Tica-EPR-9o50.N]
MAQGSRKSSKSVYSCSACGATSPKWAGQCPDCKAWNTLEETVTGSRGGAGRYAGYAGASQTKVFPLASVETASEARRSCG
SGELDRVLGGGLVDGSVVLLGGDPGIGKSTLLIQTLAQLAREIPTLYVSGEESPRQIALRAQRLGLQVEQLQLLPETAIE
RIIATAEREHPAVMVVDSIQTMYTELLQSAPGSVSQVRESTAQLVQFAKRSGTAVFLVGHVTKEGSLAGPRVLEHMVDTV
LYFEGEVGSQFRLIRAIKNRFGAVNELGVFAMTEKGLKEVSNPSAIFLSRHSQSVPGSVILVTREGTRPLLVEAQALVDE
SPLANPRRVTLGLEQNRLSMLLAVLHRHCGIGMFDQDVYVNVVGGVRITETAADLAVLLAVLSSFRDRPLPEGLVAFGEV
GLTGEIRPVPNGQDRLREAAKHGFKLAILPKANAPKRAPEGVRVVAVERLAEVLDAI

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=643538 L0Y14_RS11055 WP_006473909.1 2462242..2463615(-) (radA) [Candidatus Endoriftia persephone isolate Tica-EPR-9o50.N]
ATGGCGCAGGGTAGTCGAAAATCTTCCAAATCGGTCTACAGTTGCTCGGCCTGCGGTGCCACCTCTCCCAAGTGGGCCGG
CCAGTGTCCCGACTGCAAGGCGTGGAATACCCTGGAGGAGACGGTTACGGGTAGCCGTGGTGGGGCGGGCCGCTATGCCG
GCTACGCCGGTGCGAGCCAGACTAAGGTGTTTCCGTTGGCCTCGGTGGAGACCGCATCGGAGGCGCGCCGCAGTTGTGGC
AGCGGCGAGCTCGACCGGGTGCTGGGCGGCGGTCTGGTGGATGGCTCGGTGGTGTTGCTCGGCGGTGACCCCGGCATCGG
CAAGTCGACCTTGTTGATTCAGACCCTGGCCCAGCTTGCTCGTGAGATTCCGACCCTCTACGTCTCCGGTGAGGAGTCGC
CGCGACAGATCGCGTTGCGCGCCCAGCGCCTCGGGCTGCAGGTGGAGCAGCTGCAGTTGCTACCAGAGACTGCCATCGAG
CGCATCATTGCCACTGCCGAGCGAGAGCATCCGGCGGTGATGGTGGTCGATTCGATCCAGACCATGTATACCGAGCTGCT
GCAGTCGGCGCCGGGCTCGGTTTCTCAGGTGCGTGAGTCCACCGCGCAGCTGGTGCAGTTTGCTAAGCGTAGCGGTACCG
CGGTGTTTTTGGTCGGTCATGTGACCAAGGAGGGGAGCCTGGCGGGGCCACGGGTGTTGGAGCACATGGTTGATACGGTG
CTCTACTTCGAGGGCGAGGTGGGCAGCCAGTTCCGTCTGATTCGGGCGATCAAAAACCGTTTTGGCGCGGTCAATGAACT
GGGCGTCTTCGCCATGACCGAGAAGGGCTTGAAGGAGGTTAGCAACCCTTCAGCGATCTTCCTATCCCGCCACAGCCAGT
CGGTGCCAGGCAGTGTGATCCTGGTGACTCGGGAAGGCACCCGGCCGCTGCTGGTGGAAGCCCAGGCGCTGGTGGATGAG
AGTCCGCTGGCCAATCCACGTCGTGTCACCCTGGGGCTGGAGCAGAACCGGCTGTCGATGTTACTGGCGGTGCTGCATCG
TCACTGCGGCATCGGCATGTTCGATCAAGATGTCTATGTCAACGTGGTGGGCGGTGTGCGCATCACCGAGACTGCCGCCG
ATCTGGCGGTGCTGCTGGCAGTGCTCTCCAGCTTCCGCGATCGGCCGCTGCCGGAGGGGTTGGTGGCGTTTGGTGAGGTG
GGGCTGACCGGTGAGATCCGCCCAGTGCCGAATGGTCAGGATCGTCTGCGCGAGGCGGCCAAACATGGTTTTAAGCTCGC
CATCTTACCCAAGGCGAACGCGCCCAAGCGGGCACCGGAGGGGGTTCGGGTGGTGGCGGTGGAACGGCTTGCCGAGGTGC
TTGACGCGATATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-40)

AAA domain (AAA_25)

(86-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2FCF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.778

98.468

0.51
  radA Streptococcus pneumoniae Rx1

47.216

98.249

0.464
  radA Streptococcus pneumoniae D39

47.216

98.249

0.464
  radA Streptococcus pneumoniae R6

47.216

98.249

0.464
  radA Streptococcus pneumoniae TIGR4

47.216

98.249

0.464
  radA Streptococcus mitis SK321

47.216

98.249

0.464
  radA Streptococcus mitis NCTC 12261

46.993

98.249

0.462