Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OF379_RS17820 Genome accession   NZ_CP107284
Coordinates   3677582..3678187 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain SW4848     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3672582..3683187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF379_RS17800 (OF379_17800) aes 3672723..3673682 (+) 960 WP_000801806.1 acetyl esterase -
  OF379_RS17805 (OF379_17805) hemH 3673679..3674641 (-) 963 WP_001250087.1 ferrochelatase -
  OF379_RS17810 (OF379_17810) adk 3674773..3675417 (-) 645 WP_001220233.1 adenylate kinase -
  OF379_RS17815 (OF379_17815) htpG 3675598..3677472 (-) 1875 WP_000678197.1 molecular chaperone HtpG -
  OF379_RS17820 (OF379_17820) recR 3677582..3678187 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  OF379_RS17825 (OF379_17825) ybaB 3678187..3678516 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  OF379_RS17830 (OF379_17830) dnaX 3678569..3680500 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  OF379_RS17835 (OF379_17835) apt 3680629..3681180 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  OF379_RS17840 (OF379_17840) ybaN 3681333..3681710 (-) 378 WP_001188905.1 DUF454 family protein -
  OF379_RS17845 (OF379_17845) priC 3681780..3682307 (+) 528 WP_000844861.1 primosomal replication protein N'' -
  OF379_RS17850 (OF379_17850) rsmS 3682321..3682482 (+) 162 WP_000051157.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=643449 OF379_RS17820 WP_001195025.1 3677582..3678187(-) (recR) [Escherichia coli strain SW4848]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=643449 OF379_RS17820 WP_001195025.1 3677582..3678187(-) (recR) [Escherichia coli strain SW4848]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443