Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0Y31_RS11470 Genome accession   NZ_CP090557
Coordinates   2721785..2723158 (-) Length   457 a.a.
NCBI ID   WP_234733204.1    Uniprot ID   -
Organism   Tellurirhabdus bombi strain IE-0392     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2716785..2728158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y31_RS11440 - 2717159..2717947 (+) 789 WP_234733198.1 biotin--[acetyl-CoA-carboxylase] ligase -
  L0Y31_RS11445 - 2718020..2718187 (-) 168 WP_234733199.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  L0Y31_RS11450 pgeF 2718330..2719103 (-) 774 WP_234733200.1 peptidoglycan editing factor PgeF -
  L0Y31_RS11455 - 2719440..2719826 (+) 387 WP_234733201.1 T9SS type A sorting domain-containing protein -
  L0Y31_RS11460 - 2719906..2720754 (-) 849 WP_234733202.1 sugar phosphate isomerase/epimerase -
  L0Y31_RS11465 - 2720801..2721754 (-) 954 WP_234733203.1 tryptophan 2,3-dioxygenase family protein -
  L0Y31_RS11470 radA 2721785..2723158 (-) 1374 WP_234733204.1 DNA repair protein RadA Machinery gene
  L0Y31_RS11475 - 2723389..2724093 (+) 705 WP_234733205.1 porin family protein -
  L0Y31_RS11480 - 2724221..2724907 (+) 687 WP_234733206.1 porin family protein -
  L0Y31_RS11485 - 2725059..2725475 (-) 417 WP_234733207.1 LytTR family DNA-binding domain-containing protein -
  L0Y31_RS11490 - 2725719..2726150 (-) 432 WP_234733208.1 LytTR family DNA-binding domain-containing protein -
  L0Y31_RS11495 pheS 2726464..2727498 (+) 1035 WP_234733209.1 phenylalanine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49925.15 Da        Isoelectric Point: 5.7881

>NTDB_id=643434 L0Y31_RS11470 WP_234733204.1 2721785..2723158(-) (radA) [Tellurirhabdus bombi strain IE-0392]
MAKTKTSYFCQACGYQAAKWLGRCPSCGEWNTFVEELITKEEPDKGNWRTTTTVKTANKPKAIHAINYEEQTRVETPDGE
LNRVLGGGIVSGSLVLIGGEPGIGKSTLLLQIALGLNGLRVLYVSGEESEQQIKMRAERLPTPTSDCYIMSETSTQNIFR
TVEHFEPEVLIIDSIQTMHSSLVESGAGSVSQVRECTAELMKYAKESGVPVFIVGHITKEGSLAGPKVLEHMVDTVLTFE
GDRHTTYRILRTTKNRFGSTSELGIYEMLNSGLRQVTNPSEILISQREEALSGIAIGSMMEGNRPLLIEIQALVSVANYG
TPQRSSTGYDSKRLQMLLAVLEKRGGFRLGQQDVFLNVAGGLKVEDPAIDLAVCAAIVSSYEDIAIPSSVAFAAEVGLGG
EVRAVNRIDARISEAEKLGFKEIYISKYNVKGLDQKSFGIKIRPVSKLDEVFQGVLM

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=643434 L0Y31_RS11470 WP_234733204.1 2721785..2723158(-) (radA) [Tellurirhabdus bombi strain IE-0392]
ATGGCTAAAACAAAAACTTCATACTTCTGCCAGGCTTGCGGCTATCAGGCGGCAAAATGGCTGGGACGCTGCCCCTCCTG
CGGCGAATGGAATACCTTCGTTGAGGAACTGATTACCAAAGAGGAACCCGACAAAGGCAACTGGCGCACGACAACAACCG
TAAAAACGGCCAATAAGCCCAAGGCCATTCACGCCATCAACTACGAAGAGCAAACCCGCGTTGAAACGCCCGACGGCGAA
CTCAATCGCGTGCTGGGTGGTGGTATCGTTTCAGGTTCCCTCGTTCTGATTGGCGGAGAACCCGGTATTGGCAAATCCAC
GCTGCTGCTGCAAATCGCGTTGGGATTAAACGGCTTGCGTGTCCTGTATGTTTCGGGCGAAGAAAGTGAGCAGCAAATTA
AGATGCGTGCCGAGCGCCTGCCCACTCCCACCAGCGATTGCTACATCATGTCGGAAACGTCTACCCAGAACATTTTCCGC
ACGGTCGAGCATTTCGAGCCCGAAGTGCTCATTATTGATTCAATTCAGACGATGCATTCCTCGCTCGTCGAGTCGGGCGC
GGGCAGTGTTTCGCAGGTTCGGGAGTGTACCGCCGAACTGATGAAATACGCTAAAGAAAGCGGAGTTCCCGTTTTTATCG
TTGGCCACATTACAAAAGAAGGCTCCCTGGCTGGTCCGAAAGTGCTGGAACACATGGTCGATACGGTCCTTACTTTTGAA
GGCGACCGTCATACTACGTACCGCATTCTCCGCACGACAAAAAACCGCTTTGGCAGCACCTCCGAACTGGGCATTTACGA
GATGCTCAATTCAGGCCTGCGTCAGGTAACGAATCCGTCAGAAATTCTGATCTCACAGCGCGAGGAGGCTCTAAGCGGCA
TTGCCATTGGGTCGATGATGGAAGGCAACCGGCCTCTGCTGATTGAGATTCAGGCGCTGGTGAGCGTGGCGAATTATGGA
ACGCCCCAACGAAGCAGCACGGGCTACGACAGCAAGCGCTTACAGATGCTTTTGGCCGTGCTCGAAAAACGGGGTGGCTT
CCGGCTGGGCCAGCAGGATGTGTTTCTAAACGTGGCTGGTGGCCTCAAGGTGGAAGACCCGGCTATTGACCTGGCGGTTT
GCGCCGCCATTGTTTCCAGCTACGAGGATATTGCCATTCCATCCTCGGTTGCTTTTGCCGCCGAGGTAGGTCTGGGCGGT
GAAGTCCGTGCCGTTAACCGCATTGATGCTCGCATTTCGGAGGCAGAAAAGCTCGGTTTTAAGGAAATTTACATCTCGAA
ATACAACGTCAAAGGCCTTGACCAGAAATCGTTTGGCATCAAAATCCGGCCGGTGTCCAAGCTAGACGAGGTGTTTCAGG
GTGTTTTAATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(343-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.838

100

0.53
  radA Streptococcus mitis SK321

51.422

100

0.514
  radA Streptococcus mitis NCTC 12261

51.422

100

0.514
  radA Streptococcus pneumoniae Rx1

51.422

100

0.514
  radA Streptococcus pneumoniae D39

51.422

100

0.514
  radA Streptococcus pneumoniae R6

51.422

100

0.514
  radA Streptococcus pneumoniae TIGR4

51.422

100

0.514