Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   L0F67_RS04960 Genome accession   NZ_CP090556
Coordinates   983225..983515 (+) Length   96 a.a.
NCBI ID   WP_005621656.1    Uniprot ID   K0G7F8
Organism   Actinobacillus suis strain D20_277     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 978225..988515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0F67_RS04940 (L0F67_04925) rsmI 979378..980232 (+) 855 WP_015674480.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  L0F67_RS04945 (L0F67_04930) - 980276..980845 (-) 570 WP_005608594.1 elongation factor P hydroxylase -
  L0F67_RS04950 (L0F67_04935) - 980904..982655 (-) 1752 WP_015674481.1 protein-disulfide reductase DsbD -
  L0F67_RS04955 (L0F67_04940) - 982873..983244 (+) 372 WP_005621659.1 type II toxin-antitoxin system RelE/ParE family toxin -
  L0F67_RS04960 (L0F67_04945) HI0659 983225..983515 (+) 291 WP_005621656.1 helix-turn-helix domain-containing protein Machinery gene
  L0F67_RS04965 (L0F67_04950) - 983583..984544 (-) 962 Protein_933 calcium/sodium antiporter -
  L0F67_RS04970 (L0F67_04955) - 984617..985114 (+) 498 WP_015674483.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  L0F67_RS04975 (L0F67_04960) artP 985342..986075 (+) 734 Protein_935 arginine ABC transporter ATP-binding protein ArtP -
  L0F67_RS04980 (L0F67_04965) - 986095..986814 (+) 720 WP_015674485.1 transporter substrate-binding domain-containing protein -
  L0F67_RS04985 (L0F67_04970) artQ 986820..987491 (+) 672 WP_015674486.1 arginine ABC transporter permease ArtQ -
  L0F67_RS04990 (L0F67_04975) artM 987491..988174 (+) 684 WP_015674487.1 arginine ABC transporter permease ArtM -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10803.58 Da        Isoelectric Point: 8.7274

>NTDB_id=643416 L0F67_RS04960 WP_005621656.1 983225..983515(+) (HI0659) [Actinobacillus suis strain D20_277]
MSPIGSSWTSFEREVFNELEMEENHFRVKLILEIIETRQALGISQRKLEKLSGVKQSMIARVEKGSSNPSLGTLLKLLVP
LGKTLQIVPLDDTHSK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=643416 L0F67_RS04960 WP_005621656.1 983225..983515(+) (HI0659) [Actinobacillus suis strain D20_277]
ATGAGCCCCATTGGTTCTAGTTGGACATCATTTGAACGAGAAGTGTTTAATGAGTTGGAAATGGAAGAAAACCATTTTCG
TGTTAAATTGATTCTTGAAATTATTGAGACCCGACAGGCGTTAGGTATTTCACAACGTAAATTAGAAAAACTAAGTGGCG
TAAAACAATCGATGATAGCCCGGGTTGAAAAGGGAAGCTCCAATCCTTCTCTTGGTACGTTACTAAAATTACTGGTGCCG
CTGGGGAAAACATTACAAATCGTGCCTTTAGACGATACTCATTCTAAATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0G7F8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

65.556

93.75

0.615