Detailed information NTG0643385

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: OH217_RS20910
• Genome accession: NZ_CP107281
• Coordinates: 4237301..4238326 (-)
• Length: 341 a.a.
• NCBI ID: WP_317565782.1
• Uniprot ID: -
• Organism: Escherichia coli strain JCL301
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4232301..4243326

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH217_RS20880 (OH217_20745)	zapB	4232385..4232630 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
OH217_RS20885 (OH217_20750)	rraA	4232715..4233200 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
OH217_RS20890 (OH217_20755)	menA	4233293..4234219 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
OH217_RS20895 (OH217_20760)	hslU	4234286..4235617 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
OH217_RS20900 (OH217_20765)	hslV	4235627..4236157 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
OH217_RS20905 (OH217_20770)	ftsN	4236250..4237209 (-)	960	WP_000068828.1	cell division protein FtsN	-
OH217_RS20910 (OH217_20775)	cytR	4237301..4238326 (-)	1026	WP_317565782.1	DNA-binding transcriptional regulator CytR	Regulator
OH217_RS20915 (OH217_20780)	priA	4238482..4240680 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
OH217_RS20920 (OH217_20785)	rpmE	4240883..4241095 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
OH217_RS20925 (OH217_20790)	yiiX	4241156..4241764 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
OH217_RS20930 (OH217_20795)	metJ	4241948..4242265 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37865.87 Da
• Isoelectric Point: 6.3826

>NTDB_id=643385 OH217_RS20910 WP_317565782.1 4237301..4238326(-) (cytR) [Escherichia coli strain JCL301]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEICREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=643385 OH217_RS20910 WP_317565782.1 4237301..4238326(-) (cytR) [Escherichia coli strain JCL301]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCTGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625