Detailed information NTG0643300

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA22_RS27960
• Genome accession: NZ_CP107275
• Coordinates: 5966336..5967340 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA22
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5961336..5972340

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA22_RS27945 (PALA22_05544)	-	5961819..5962826 (+)	1008	WP_003098486.1	TolB family protein	-
PALA22_RS27950 (PALA22_05545)	mutS	5962952..5965519 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA22_RS27955 (PALA22_05546)	fdxA	5965586..5965909 (+)	324	WP_003119354.1	ferredoxin FdxA	-
PALA22_RS27960 (PALA22_05547)	rpoS	5966336..5967340 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA22_RS27965 (PALA22_05548)	-	5967445..5968338 (-)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA22_RS27970 (PALA22_05549)	-	5968384..5969019 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA22_RS27975 (PALA22_05550)	surE	5969052..5969801 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA22_RS27980 (PALA22_05551)	truD	5969789..5970856 (-)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PALA22_RS27985 (PALA22_05552)	ispF	5970853..5971326 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA22_RS27990 (PALA22_05553)	fghA	5971397..5972248 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=643300 PALA22_RS27960 WP_003113871.1 5966336..5967340(-) (rpoS) [Pseudomonas aeruginosa strain PALA22]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=643300 PALA22_RS27960 WP_003113871.1 5966336..5967340(-) (rpoS) [Pseudomonas aeruginosa strain PALA22]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
TCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653