Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PALA22_RS25165 Genome accession   NZ_CP107275
Coordinates   5394696..5395025 (-) Length   109 a.a.
NCBI ID   WP_023115163.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA22     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5389696..5400025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA22_RS25150 (PALA22_04993) uvrB 5391083..5393095 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  PALA22_RS25155 (PALA22_04994) - 5393283..5394479 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  PALA22_RS25165 (PALA22_04996) comEA/comE1 5394696..5395025 (-) 330 WP_023115163.1 ComEA family DNA-binding protein Machinery gene
  PALA22_RS25170 (PALA22_04997) - 5395216..5397213 (-) 1998 WP_088406739.1 polysaccharide biosynthesis protein -
  PALA22_RS25175 (PALA22_04998) - 5397248..5398267 (-) 1020 WP_003158833.1 MraY family glycosyltransferase -
  PALA22_RS25180 (PALA22_04999) - 5398269..5399225 (-) 957 WP_003104579.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11293.27 Da        Isoelectric Point: 9.1462

>NTDB_id=643295 PALA22_RS25165 WP_023115163.1 5394696..5395025(-) (comEA/comE1) [Pseudomonas aeruginosa strain PALA22]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDAAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=643295 PALA22_RS25165 WP_023115163.1 5394696..5395025(-) (comEA/comE1) [Pseudomonas aeruginosa strain PALA22]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
CGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

41.346

95.413

0.394