Detailed information NTG0643236

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: LZQ98_RS18440
• Genome accession: NZ_CP090527
• Coordinates: 1454217..1455584 (+)
• Length: 455 a.a.
• NCBI ID: WP_224445997.1
• Uniprot ID: -
• Organism: Cupriavidus metallidurans strain ZM16
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1449217..1460584

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZQ98_RS18420	-	1449237..1450190 (+)	954	WP_224445996.1	uracil-DNA glycosylase	-
LZQ98_RS18425	-	1450171..1451280 (+)	1110	WP_011516155.1	DUF1853 family protein	-
LZQ98_RS18430	lplT	1451331..1452650 (-)	1320	WP_011516156.1	lysophospholipid transporter LplT	-
LZQ98_RS18435	alr	1453110..1454216 (+)	1107	WP_011516157.1	alanine racemase	-
LZQ98_RS18440	radA	1454217..1455584 (+)	1368	WP_224445997.1	DNA repair protein RadA	Machinery gene
LZQ98_RS18445	-	1455659..1457758 (-)	2100	WP_224445998.1	hypothetical protein	-
LZQ98_RS18450	-	1458065..1458550 (+)	486	WP_008649101.1	disulfide bond formation protein B	-
LZQ98_RS18455	-	1458637..1460559 (-)	1923	WP_224445999.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 48518.79 Da
• Isoelectric Point: 7.1653

>NTDB_id=643236 LZQ98_RS18440 WP_224445997.1 1454217..1455584(+) (radA) [Cupriavidus metallidurans strain ZM16]
MAKTKTVYTCTECGGTTPRWAGQCPQCNAWNTLVETVADSGSSAARRFQPLATSAVVRKLSEIEAADVPRFSTGIDEFDR
VLGGGLVSGGVVLIGGDPGIGKSTLLLQTLANLSASRRVLYVSGEESAAQIALRAHRLGVEAATLGLLPEIQLEKIQATL
EADKPEVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKSTGITIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGD
THSSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEEQVAGSCVLVTQEGTRPLLVEVQALVDTANVPNP
RRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEI
RPSPRGQERLKEAAKLGFTMAVIPKANAPKQRIDGLEVIAVDRLEQAIDRVRYLD

Nucleotide

• Length: 1368 bp

>NTDB_id=643236 LZQ98_RS18440 WP_224445997.1 1454217..1455584(+) (radA) [Cupriavidus metallidurans strain ZM16]
ATGGCCAAGACCAAGACGGTATACACATGCACCGAGTGCGGTGGCACCACGCCGCGATGGGCGGGTCAATGCCCACAGTG
CAACGCCTGGAACACGCTGGTGGAAACGGTGGCGGATTCGGGTTCGTCCGCGGCACGCCGCTTCCAGCCGCTGGCGACGT
CCGCTGTGGTGCGCAAGCTGTCGGAAATCGAGGCGGCCGATGTGCCACGCTTCTCGACCGGCATCGACGAATTCGACCGC
GTGCTTGGCGGCGGCCTGGTGTCGGGTGGGGTGGTGCTGATCGGCGGGGACCCCGGCATCGGTAAATCGACCCTGCTGCT
GCAGACGCTGGCCAACCTGTCGGCCAGCCGGCGCGTGCTCTATGTGAGCGGCGAGGAATCCGCCGCCCAGATCGCGCTGC
GCGCCCATCGCCTGGGCGTGGAGGCCGCCACGCTGGGCCTGCTGCCCGAGATTCAGTTGGAGAAGATCCAGGCCACGCTC
GAGGCCGACAAGCCCGAGGTGGCCGTGATCGACTCGATCCAGACGGTTTACTCGGAGGCGCTGACGTCCGCGCCGGGCTC
CGTGGCACAGGTACGCGAATGCGCGGCGCAACTGACGCGGATCGCCAAGAGTACCGGCATCACGATCATCCTGGTCGGCC
ACGTAACCAAGGAAGGCAGCCTGGCCGGCCCGCGCGTGCTCGAACACATCGTGGACACGGTGCTGTACTTCGAGGGGGAC
ACCCATTCCTCGCACCGCTTGATCCGGGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGTGTCTTCGCGATGAC
CGAGCGCGGCCTGCGCGGCATCAGCAATCCGTCTGCGCTGTTCCTCTCCCAGCATGAGGAGCAGGTGGCCGGTTCCTGCG
TGCTGGTGACCCAGGAGGGCACGCGGCCATTGCTGGTCGAAGTGCAGGCGCTGGTCGACACCGCCAACGTGCCGAATCCG
CGCCGGCTGGCCGTGGGCCTCGAACAGAACCGGCTGGCGATGCTGCTGGCCGTGCTGCATCGTCACGCGGGCATCGCGTG
TTTCGACCAGGACGTCTTCCTGAACGCGGTGGGCGGGGTCAAGATCACCGAGCCGGCCGCCGACCTGGCCGTGCTGCTGT
CGATTCATTCGTCGATGCGCAACAAGCCGCTGCCTCGCGGCCTGGTGGTGTTCGGCGAAGTGGGCCTGGCGGGAGAAATC
CGCCCGAGCCCGCGCGGACAGGAGCGGCTCAAGGAAGCCGCCAAGCTTGGCTTCACGATGGCGGTGATCCCGAAGGCCAA
CGCGCCCAAGCAGCGGATCGATGGACTGGAGGTCATCGCGGTGGACCGGCTGGAACAGGCCATCGACCGGGTCAGGTATC
TGGACTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (62-219)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.985	100	0.512
radA	Streptococcus mitis SK321	46.638	100	0.473
radA	Streptococcus pneumoniae D39	46.537	100	0.473
radA	Streptococcus pneumoniae TIGR4	46.537	100	0.473
radA	Streptococcus pneumoniae R6	46.537	100	0.473
radA	Streptococcus pneumoniae Rx1	46.537	100	0.473
radA	Streptococcus mitis NCTC 12261	46.32	100	0.47