Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PALA22_RS05160 Genome accession   NZ_CP107275
Coordinates   1105978..1106502 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PALA22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1100978..1111502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA22_RS05140 (PALA22_01021) - 1101045..1103516 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  PALA22_RS05145 (PALA22_01022) pilM 1103701..1104765 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PALA22_RS05150 (PALA22_01023) pilN 1104765..1105361 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PALA22_RS05155 (PALA22_01024) pilO 1105358..1105981 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PALA22_RS05160 (PALA22_01025) comL/pilP 1105978..1106502 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PALA22_RS05165 (PALA22_01026) pilQ 1106555..1108699 (+) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  PALA22_RS05170 (PALA22_01027) aroK 1108711..1109229 (+) 519 WP_003095833.1 shikimate kinase AroK -
  PALA22_RS05175 (PALA22_01028) aroB 1109279..1110385 (+) 1107 WP_003107839.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=643236 PALA22_RS05160 WP_003095836.1 1105978..1106502(+) (comL/pilP) [Pseudomonas aeruginosa strain PALA22]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=643236 PALA22_RS05160 WP_003095836.1 1105978..1106502(+) (comL/pilP) [Pseudomonas aeruginosa strain PALA22]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362