Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LZQ98_RS13255 Genome accession   NZ_CP090527
Coordinates   341069..342547 (-) Length   492 a.a.
NCBI ID   WP_011515189.1    Uniprot ID   Q1LRN7
Organism   Cupriavidus metallidurans strain ZM16     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336069..347547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZQ98_RS13225 - 336441..337094 (-) 654 WP_011515184.1 LON peptidase substrate-binding domain-containing protein -
  LZQ98_RS13230 rapZ 337141..338031 (-) 891 WP_224445616.1 RNase adapter RapZ -
  LZQ98_RS13235 - 338146..338487 (-) 342 WP_017511023.1 PsiF family protein -
  LZQ98_RS13240 hprK 338693..339664 (-) 972 WP_008650955.1 HPr(Ser) kinase/phosphatase -
  LZQ98_RS13245 ptsN 339733..340188 (-) 456 WP_017511024.1 PTS IIA-like nitrogen regulatory protein PtsN -
  LZQ98_RS13250 hpf 340665..341018 (-) 354 WP_008650960.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LZQ98_RS13255 rpoN/rpoN1 341069..342547 (-) 1479 WP_011515189.1 RNA polymerase factor sigma-54 Machinery gene
  LZQ98_RS13260 lptB 342671..343462 (-) 792 WP_011515190.1 LPS export ABC transporter ATP-binding protein -
  LZQ98_RS13265 lptA 343488..344132 (-) 645 WP_011515191.1 lipopolysaccharide transport periplasmic protein LptA -
  LZQ98_RS13270 lptC 344195..344821 (-) 627 WP_011515192.1 LPS export ABC transporter periplasmic protein LptC -
  LZQ98_RS13275 - 344825..345808 (-) 984 WP_011515193.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54773.03 Da        Isoelectric Point: 4.9624

>NTDB_id=643231 LZQ98_RS13255 WP_011515189.1 341069..342547(-) (rpoN/rpoN1) [Cupriavidus metallidurans strain ZM16]
MKPSLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVEQALTENPLLERENDWIESPLRVAADGSVNVQSAPAPASSEPQ
GNGDDRANGANGEDDSYGDSAGDDYGSDWSLDDFARRPQGDDDEKTPMQLREAEPTLREYLMEQLTPLKISTRDKGLAIF
LIESLDDDGYLGATLDEICSELPKELEFEVDEVQAILTLLQSFDPPGVGARNAAECLTLQLRRLQHPQRDLALSIVNHHL
ELLAVRDYTRLKKALQVDEIALKAAHDLIRSLAPYPGHAYSRPEADFVVPDVFVRKSGSSWIAQLNPDVMPRLRINDMYA
QILRGAKGEAGAAGLQQKLQEARWLIKNIQQRFDTILRVAQAIVERQRNFFSHGEIAMRPLVLREIADTLGLHESTISRV
TTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLIGAEEPRNPLSDSRIAELLGEQGFVVARRTVAKYREA
LKIPAVNLRKTL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=643231 LZQ98_RS13255 WP_011515189.1 341069..342547(-) (rpoN/rpoN1) [Cupriavidus metallidurans strain ZM16]
ATGAAACCATCGCTTCAGCTTCGACTTTCCCAGCATCTGGCTCTGACTCCTCAACTGCAGCAGTCCATCCGGCTGCTGCA
GTTATCCACACTGGAGCTGCAACAGGAAGTCGAGCAGGCGCTGACCGAGAATCCACTGCTCGAACGCGAGAACGACTGGA
TCGAAAGCCCGCTGCGCGTGGCCGCGGACGGGTCGGTCAACGTGCAAAGCGCCCCGGCGCCAGCATCTTCCGAACCGCAA
GGTAACGGCGACGATCGCGCGAACGGCGCCAATGGCGAAGACGACAGCTACGGCGACAGCGCGGGTGACGATTACGGCAG
CGACTGGAGCCTGGACGATTTCGCTCGCCGGCCTCAGGGCGACGATGACGAGAAGACGCCGATGCAGCTTCGCGAAGCGG
AACCCACGCTGCGCGAATACCTGATGGAACAGCTCACGCCGCTGAAGATCTCCACGCGTGACAAGGGCCTGGCCATCTTT
CTGATCGAGTCGCTTGACGACGACGGCTACCTGGGCGCAACGCTCGACGAGATCTGTTCGGAACTGCCCAAGGAACTCGA
ATTCGAAGTCGATGAAGTGCAGGCGATACTGACCCTGCTGCAGAGCTTCGACCCGCCTGGCGTGGGTGCGCGCAACGCGG
CGGAATGCCTTACCCTGCAACTGCGCCGTCTGCAACATCCGCAGCGGGACCTTGCATTATCGATCGTCAACCACCACCTG
GAGTTATTGGCCGTGCGTGATTACACGCGGCTCAAGAAAGCCCTGCAGGTTGACGAAATTGCACTTAAGGCCGCGCACGA
TCTGATCCGCTCGCTCGCACCGTATCCCGGACATGCCTACAGCCGTCCGGAAGCGGACTTCGTGGTACCGGATGTGTTCG
TGCGCAAGAGTGGCAGTAGCTGGATCGCGCAGCTCAATCCCGACGTGATGCCGCGTCTGCGCATCAACGACATGTACGCG
CAGATTTTGCGCGGTGCAAAAGGGGAAGCGGGCGCGGCCGGGCTGCAGCAGAAGCTCCAGGAGGCGCGGTGGCTCATCAA
GAACATTCAGCAGCGTTTCGACACGATCCTGCGTGTTGCGCAGGCAATTGTGGAGCGTCAAAGGAACTTTTTCTCGCACG
GGGAAATCGCGATGCGCCCCTTGGTTTTGCGGGAGATTGCCGATACACTGGGTCTACACGAGTCGACCATTTCCCGGGTG
ACTACGAATAAATACATGGCCACGCCGATGGGTACTTTCGAGTTGAAGTACTTCTTTGGTAGCCACGTCTCCACGGAGAC
TGGCGGCGCGGCCTCATCCACGGCGATCCGCGCGCTGATCAAGCAACTGATAGGAGCCGAAGAACCCAGGAATCCCCTTT
CCGACAGCCGCATCGCCGAGTTGCTGGGCGAACAGGGCTTTGTGGTCGCACGCCGCACGGTGGCCAAGTACCGCGAAGCG
CTGAAGATCCCCGCAGTCAATCTCCGCAAGACTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-319)

Sigma-54, DNA binding domain (Sigma54_DBD)

(335-490)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1LRN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

78

100

0.793