Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LOD78_RS10135 Genome accession   NZ_CP090522
Coordinates   1983736..1984494 (+) Length   252 a.a.
NCBI ID   WP_171989297.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS17     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1978736..1989494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD78_RS10120 (LOD78_10095) - 1981130..1981792 (-) 663 WP_274505469.1 YoaK family protein -
  LOD78_RS10125 (LOD78_10100) rlmH 1981820..1982299 (-) 480 WP_130554909.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  LOD78_RS10130 (LOD78_10105) htrA 1982492..1983673 (+) 1182 WP_171989296.1 trypsin-like peptidase domain-containing protein Regulator
  LOD78_RS10135 (LOD78_10110) spo0J 1983736..1984494 (+) 759 WP_171989297.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28969.39 Da        Isoelectric Point: 9.4765

>NTDB_id=643208 LOD78_RS10135 WP_171989297.1 1983736..1984494(+) (spo0J) [Streptococcus parasuis strain SS17]
MEELHYLKIKDIQANPYQPRLHFDEEKLLELAQSIKENGVIQPIIVRRSPLIGFELLAGERRLRASQLAGLTEIPAVIKH
LSDDDLLYQAIIENLQRSDLNPIEEAHSYEKLIKKGLTHDEIAQIMGKSRPYITNLLRLLHLSESTRQAVETGKITQGHA
RQLVALSERQQAEWVQKIQEKDISVRQLETILSSKKKKTIRKSNQFVAEEEEKLAKLLGTKVTIQQKKNGSGQLTIQFQN
IEEFERIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=643208 LOD78_RS10135 WP_171989297.1 1983736..1984494(+) (spo0J) [Streptococcus parasuis strain SS17]
ATGGAAGAACTACACTATCTCAAAATAAAAGACATTCAGGCCAATCCCTATCAACCAAGATTGCATTTTGATGAAGAAAA
ATTATTGGAATTAGCTCAATCTATCAAAGAAAATGGCGTCATTCAACCTATTATTGTTCGCAGATCACCGCTGATTGGTT
TTGAGTTACTTGCTGGTGAAAGACGATTAAGAGCTAGTCAACTAGCGGGATTAACAGAGATTCCAGCAGTCATCAAGCAT
CTATCTGATGATGATTTACTCTACCAAGCTATCATAGAAAACTTACAACGCTCTGACCTCAATCCTATTGAAGAGGCTCA
TTCCTACGAAAAGTTGATAAAAAAAGGCTTAACACATGATGAGATTGCCCAAATCATGGGAAAATCACGACCATATATCA
CTAATCTTCTTCGTTTACTCCATTTATCCGAATCTACGAGGCAAGCAGTAGAAACAGGAAAAATCACACAAGGGCATGCT
AGACAGCTAGTAGCACTATCAGAGAGACAACAAGCAGAATGGGTTCAAAAAATCCAAGAAAAGGATATCAGCGTACGACA
GTTAGAAACAATACTATCCTCTAAAAAGAAAAAAACAATTAGAAAATCCAACCAATTTGTTGCAGAAGAAGAAGAGAAAT
TAGCAAAACTACTTGGAACCAAGGTAACAATCCAACAAAAGAAAAATGGATCGGGACAACTGACTATTCAATTTCAAAAC
ATCGAAGAATTTGAAAGAATTATCAACAGTCTGAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(145-191)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.941

100

0.552