Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   LOD78_RS08405 Genome accession   NZ_CP090522
Coordinates   1657768..1658502 (-) Length   244 a.a.
NCBI ID   WP_274505364.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS17     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1652768..1663502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD78_RS08380 (LOD78_08375) - 1653707..1654561 (-) 855 WP_174846640.1 helix-turn-helix domain-containing protein -
  LOD78_RS08385 (LOD78_08380) rpmB 1654861..1655049 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  LOD78_RS08390 (LOD78_08385) trmB 1655252..1655890 (-) 639 WP_174846641.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  LOD78_RS08395 (LOD78_08390) - 1655887..1656681 (-) 795 WP_105127234.1 phosphotransferase family protein -
  LOD78_RS08400 (LOD78_08395) - 1656731..1657771 (-) 1041 WP_171989647.1 ABC transporter permease -
  LOD78_RS08405 (LOD78_08400) pptA 1657768..1658502 (-) 735 WP_274505364.1 ABC transporter ATP-binding protein Regulator
  LOD78_RS08410 (LOD78_08405) - 1658565..1658978 (+) 414 WP_130555357.1 HIT family protein -
  LOD78_RS08415 (LOD78_08410) - 1658980..1659285 (+) 306 WP_171989649.1 chemotaxis protein -
  LOD78_RS08420 (LOD78_08415) - 1659424..1660599 (-) 1176 WP_274505365.1 LCP family protein -
  LOD78_RS08425 (LOD78_08420) - 1660596..1661123 (-) 528 WP_171989651.1 GNAT family N-acetyltransferase -
  LOD78_RS08430 (LOD78_08425) tsaE 1661116..1661556 (-) 441 WP_024404749.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  LOD78_RS08435 (LOD78_08430) - 1661662..1663326 (-) 1665 WP_174846647.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27136.53 Da        Isoelectric Point: 4.6870

>NTDB_id=643193 LOD78_RS08405 WP_274505364.1 1657768..1658502(-) (pptA) [Streptococcus parasuis strain SS17]
MLEVKNITGGYINIPVVKDVSFTVESGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGEILIDGKSLVQDAENYRKKIGFIP
ETPSLYEELTLKEHLEVVALAYDLTWDQAWSRVQGLLTIFRLDEKLDWFPVHFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLVNLLEEEKAKKTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQHAFNMKGASLNEIYLALTQE
GVAR

Nucleotide


Download         Length: 735 bp        

>NTDB_id=643193 LOD78_RS08405 WP_274505364.1 1657768..1658502(-) (pptA) [Streptococcus parasuis strain SS17]
ATGTTAGAAGTAAAAAATATAACAGGAGGCTACATCAATATTCCCGTAGTGAAAGATGTATCTTTCACTGTTGAGAGCGG
TCAGTTAGTTGGCTTAATTGGATTGAATGGTGCAGGGAAATCAACGACGATAAAGGAAATTATTGGCCTTTTGACTCCTT
ATCAGGGAGAAATTTTAATTGATGGGAAAAGTCTTGTACAGGATGCAGAGAATTATCGGAAGAAAATTGGATTTATTCCT
GAAACACCTAGCTTGTATGAGGAATTGACGCTTAAGGAACATTTAGAGGTAGTAGCTTTAGCCTATGATTTGACTTGGGA
TCAAGCCTGGAGTCGAGTTCAGGGGTTGTTAACGATTTTTCGGTTGGATGAAAAATTGGACTGGTTCCCTGTTCATTTTT
CTAAGGGAATGAAACAGAAAGTTATGATTATCTGTGCTTTCATGGTGGAACCGAGTTTGTTGATTGTTGACGAGCCGTTT
TTAGGGCTGGATCCTGTAGCGATTTCGGACTTAGTAAACCTATTAGAAGAGGAGAAAGCTAAAAAAACTTCAATTCTGAT
GTCTACTCATGTTCTTGACTCGGCCGAGAAAATGTGTGATTCTTTTGTTATCTTACATCAAGGTCAGGTTCGTGCAACAG
GGAATTTAGAGGAATTGCAACATGCCTTTAACATGAAAGGTGCAAGTCTCAACGAAATTTATCTGGCGTTGACACAAGAA
GGAGTGGCCAGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

70.293

97.951

0.689
  pptA Streptococcus thermophilus LMD-9

69.038

97.951

0.676